Data · dataset · 2026
Figure 2 from Improving Long-Read Somatic Structural Variant Calling with Pangenome and <i>De Novo</i> Personal Genome Assembly
Listed in ZivaHub
<p>Somatic SV calling on matched COLO829 tumor–normal cell lines. <b>A–D,</b> Metrics on <i>de novo</i> assembly-based filtering. <b>E–H,</b> Metrics on pangenome-based filtering. <b>A</b> and <b>E,</b> Number of FP and TP SV calls (<b>C</b> and <b>G</b>) from PacBio HiFi data at different cutoffs on supporting reads.
Description
The solid bars correspond to SV calls still observed in the alignment against the COLO829BL (derived from blood) assembly, whereas the shaded bars correspond to calls filtered by the assembly.
The horizontal line gives the number of SV calls from Valle-Inclan and colleagues (<a target="_blank" href="#bib22">22</a>), which are taken as ground truth. <b>B</b> and <b>F,</b> Number of FP and TP calls (<b>D</b> and <b>H</b>) from ONT reads.</p>
Links
Where it is published
- DOI doi.org/10.1158/2767-9764.34022870 ↗
DOI / persistent id · from zivahub uct ac za
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from zivahub uct ac za
Topics
- From keywords
- Cancer · Computer Science & AI · Earth & Environmental Science · Life Sciences · Medicine & Health · Sequence analysis
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ZivaHub | oai:figshare.com:article/34022870 | 8 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[disease].local:disease:cancer | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['Cancer'] |
| concepts[field].anzsrc:field:310206 | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['Sequence Analysis'] |
| concepts[field].local:field:computer-science-ai | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| description | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/description |
| license_text | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| publication_date | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| title | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/title |