← Search

Table · dataset · 2023

Metagenome and metagenome-assembled genome predicted gene sequences and their annotations for "Spatial heterogeneity in carbohydrates and their utilisation by microbial communities in the high North Atlantic"

Listed in Edmond

This dataset incorporates gene sequences predicted from PacBio HiFi metagenome reads and metagenome-assembled genomes (MAGs) along with their taxonomic and functional annotations.

Description

Eight PacBio HiFi metagenomes were generated from seawater samples collected in the Eastern Fram Strait for the study "Spatial heterogeneity in carbohydrates and their utilisation by microbial communities in the high North Atlantic". See the methods section of the manuscript for details on data processing.

Here, we provide the predicted gene sequences from the PacBio HiFi reads and MAGs along with tables that outline the position of the gene on the original read/contig, length, direction of transcription and taxonomic and functional annotation results from numerous databases. The raw metagenome reads and MAGs are available at ENA PRJEB58071.

Links

Where it is published

Catalogue records · 1

Topics

Stated by source
Biology · Biology
Inferred from text
Evolutionary biology 69%
Provenance · 2 source records, 24 field assertions
SourceKeyLast seenRaw
Edmonddoi:10.17617/3.DZSEAN13 d agoJSON v1
Edmonddoi:10.17617/3.DZSEAN11 d agoJSON v1
FieldAssertionExtractorEvidence
concepts[field].anzsrc:group:3104enrichment · edmond mpdl mpg detaxonomy-embedding@1.0.0title+keywords+description (69%)
concepts[field].dataverse_subject:biologysource · edmond mpdl mpg deconnector:edmond_mpdl_mpg_de@1.0.0/subjects
concepts[field].dataverse_subject:biologysource · edmond mpg deconnector:edmond_mpg_de@1.0.0/subjects
concepts[field].local:field:astronomymapping · edmond mpg deconnector:edmond_mpg_de@1.0.0/subjects
concepts[field].local:field:chemistrymapping · edmond mpg deconnector:edmond_mpg_de@1.0.0/subjects
concepts[field].local:field:computer-science-aimapping · edmond mpg deconnector:edmond_mpg_de@1.0.0/subjects
concepts[field].local:field:earth-environmentalmapping · edmond mpg deconnector:edmond_mpg_de@1.0.0/subjects
concepts[field].local:field:economics-financemapping · edmond mpg deconnector:edmond_mpg_de@1.0.0/subjects
concepts[field].local:field:engineeringmapping · edmond mpg deconnector:edmond_mpg_de@1.0.0/subjects
concepts[field].local:field:humanitiesmapping · edmond mpg deconnector:edmond_mpg_de@1.0.0/subjects
concepts[field].local:field:life-sciencesmapping · edmond mpg deconnector:edmond_mpg_de@1.0.0/subjects
concepts[field].local:field:life-sciencesmapping · edmond mpdl mpg deconnector:edmond_mpdl_mpg_de@1.0.0/subjects
concepts[field].local:field:materials-sciencemapping · edmond mpg deconnector:edmond_mpg_de@1.0.0/subjects
concepts[field].local:field:medicine-healthmapping · edmond mpg deconnector:edmond_mpg_de@1.0.0/subjects
concepts[field].local:field:ocean-atmosphericmapping · edmond mpg deconnector:edmond_mpg_de@1.0.0/subjects
concepts[field].local:field:ocean-atmosphericmapping · edmond mpdl mpg deconnector:edmond_mpdl_mpg_de@1.0.0/subjects
concepts[field].local:field:physicsmapping · edmond mpg deconnector:edmond_mpg_de@1.0.0/subjects
concepts[field].local:field:social-sciencemapping · edmond mpg deconnector:edmond_mpg_de@1.0.0/subjects
created_datesource · edmond mpdl mpg deconnector:edmond_mpdl_mpg_de@1.0.0
descriptionsource · edmond mpdl mpg deconnector:edmond_mpdl_mpg_de@1.0.0/description
publication_datesource · edmond mpdl mpg deconnector:edmond_mpdl_mpg_de@1.0.0
titlesource · edmond mpdl mpg deconnector:edmond_mpdl_mpg_de@1.0.0/name
updated_datesource · edmond mpdl mpg deconnector:edmond_mpdl_mpg_de@1.0.0
version_labelsource · edmond mpdl mpg deconnector:edmond_mpdl_mpg_de@1.0.0