Omics · dataset · 2025
Resistant bacteria isolated throughout fresh produce and environmental samples from smallholder farms in South Africa
Listed in UP Research Data Repository
<p dir="ltr">This comprehensive dataset comprises of physicochemical, microbiological, and genomic analyses of environmental samples collected from smallholder fresh produce farming systems in the Northern regions of South Africa.
Description
It explores the <b>water-soil-plant nexus </b>through analysis of parameters including water quality (pH, BOD, COD, turbidity, TDS and TSS), total coliform and <i>Escherichia coli </i>contamination levels in irrigation water, soil, and fresh produce were analysed using SAS version 9.3 statistical software, as well as the resistance profiles of bacterial isolates (e.g <i>E. coli, Pseudomonas aeruginosa</i>, other Enterobacterales species).
Genomic data, acquired through whole genome sequencing, includes bacterial sequence types, serotypes, pathogenicity predictions, mobile genetic elements, virulence and resistance gene presence in separate table formats.</p>
Links
Where it is published
- DOI doi.org/10.25403/upresearchdata.28890029.v1 ↗
DOI / persistent id · from researchdata up ac za
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from researchdata up ac za
Topics
- From keywords
- Earth & Environmental Science · Food safety, traceability, certification and authenticity · Genome sequencing · Life Sciences · Medicine & Health
- Inferred from text
- Sequencing 75% · Tabular 65%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| UP Research Data Repository | oai:figshare.com:article/28890029 | 17 h ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].anzsrc:field:300605 | mapping · researchdata up ac za | vocabulary-mapper@1.0.0 | keywords['Food safety, traceability, certification and authenticity'] |
| concepts[field].local:field:earth-environmental | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[modality].local:modality:genome-sequencing | mapping · researchdata up ac za | vocabulary-mapper@1.0.0 | keywords['Whole genome sequencing'] |
| concepts[modality].local:modality:sequencing | enrichment · researchdata up ac za | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:tabular | enrichment · researchdata up ac za | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | /metadata/dc/description |
| license | source · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| title | source · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | /metadata/dc/title |