Data · dataset · 2021
Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation
Listed in University of Liverpool Research Data Catalogue
Experimental data associated with "Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation".
Description
See README file for more details. Full analysis scripts can be found at github.com/jpjh/COMPMUT.
Raw RNAseq reads can be found at NCBI-GEO, accession number GSE151570.
Links
Where it is published
- datacat.liverpool.ac.uk /1275/7/COMPMUT_exp_data_1.csv ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/8/COMPMUT_exp_data_2.csv ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/11/COMPMUT_exp_data_3-1.csv ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/15/COMPMUT_exp_data_4.csv ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/2/COMPMUT_exp_data_5.csv ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/17/COMPMUT_exp_data_5-1.csv ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/4/COMPMUT_exp_data_6.csv ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/18/COMPMUT_exp_data_7.csv ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/12/COMPMUT_exp_data_8.csv ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/5/COMPMUT_exp_data_9.csv ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/20/COMPMUT_RNAseq_1_de_table_chr_vanc.csv ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/13/COMPMUT_RNAseq_2_de_table_chr_comp.csv ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/9/COMPMUT_RNAseq_3_de_table_pQ57.csv ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/21/COMPMUT_RNAseq_4_de_table_pQ103.csv ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/28/COMPMUT_RNAseq_5_tpm.csv ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/10/COMPMUT_RsmA_prediction.txt ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/14/COMPMUT_mutations.csv ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/25/COMPMUT_analysis_Sep21.zip ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/26/COMPMUT_readme.html ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/27/COMPMUT_readme.md ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- datacat.liverpool.ac.uk /1275/3/COMPMUT_exp_data_3.csv ↗
University of Liverpool Research Data Catalogue record
landing page · from datacat liverpool ac uk
- DOI doi.org/10.17638/datacat.liverpool.ac.uk/1275 ↗
DOI / persistent id · from datacat liverpool ac uk
Catalogue records · 1
- OAI-PMH record datacat.liverpool.ac.uk/cgi/oai2?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3… ↗
metadata API · from datacat liverpool ac uk
Topics
- From keywords
- Earth & Environmental Science
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 6 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| University of Liverpool Research Data Catalogue | oai:datacat.liverpool.ac.uk:1275 | 15 h ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].local:field:earth-environmental | mapping · datacat liverpool ac uk | connector:datacat_liverpool_ac_uk@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · datacat liverpool ac uk | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · datacat liverpool ac uk | connector:datacat_liverpool_ac_uk@1.0.0 | /metadata/dc/description |
| license_text | source · datacat liverpool ac uk | connector:datacat_liverpool_ac_uk@1.0.0 | |
| publication_date | source · datacat liverpool ac uk | connector:datacat_liverpool_ac_uk@1.0.0 | |
| title | source · datacat liverpool ac uk | connector:datacat_liverpool_ac_uk@1.0.0 | /metadata/dc/title |