← Search

Data · dataset · 2022

Virome and resistome disease state interpretation

Listed in UP Research Data Repository

<p>The data represented by the file (<strong>viralandresistancegraphs.zip</strong>) are the human viral species and bacteriophages identified within the paediatric HIV positive and HIV negative bronchiectasis patient cohorts.

Description

This information gives insight into the virome of this cohort during stable state of disease. The data represents a majority of bacteriopahges and only two clinically relevant viruses. </p> <p>The resistome data is split into shotgun metagenomic data and M-PCR data for the above mentioned cohort of patients.

A selected number of patients were chosen based on their clinical demographics and microbiome demonstarted through next generation sequencing. The dataset further shows the antimicrobial resistome patterns between the cohorts and the resistance rates to specific antimicrobial classes. This was then aligned to the current treatment regimen of the patient chort to determine if the resistance detected is to the current treatment protocol.</p>

Links

Where it is published

Catalogue records · 1

Topics

Inferred from text
Disease 75% · Sequencing 75%
Provenance · 1 source records, 10 field assertions
SourceKeyLast seenRaw
UP Research Data Repositoryoai:figshare.com:article/2041154718 h agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[disease].local:disease:diseaseenrichment · researchdata up ac zakeyword-concept-rules@1.0.0title+description (75%)
concepts[field].local:field:earth-environmentalmapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:life-sciencesmapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:medicine-healthmapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[modality].local:modality:sequencingenrichment · researchdata up ac zakeyword-concept-rules@1.0.0title+description (75%)
descriptionsource · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0/metadata/dc/description
licensesource · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0/metadata/dc/rights
publication_datesource · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
titlesource · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0/metadata/dc/title