Data · dataset · 2021
Distribution and phasing of sequence motifs that facilitate CRISPR adaptation. Santiago-Frangos et al
Listed in Teesside University Research Data Repository
Data S1.
Description
Position weight matrices of subtype I-C, I-E, I-F and II-C CRISPR leader motifs and I-F CRISPR repeat, Related to STAR methods, Table 1 and Figures 2, 3, 4, S1, S2, S5. (A) I-EA motif.
(B) I-EB motif. (C) I-E IHF binding site. (D) I-E leader anchoring motif.
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(E) I-E Upstream motif. (F) I-F IHF binding site. (G) I-F CRISPR repeat.
(H) I-F Upstream motif. (I) I-C Upstream motif. (J) II-C Upstream motif.
Data S2. Summary of significant matches to motifs found in CRISPR leaders, Related to STAR methods, Table 1 and Figures 2, 3, S1, S5. (A) Significant matches to position weight matrices in all CRISPR leaders analyzed.
(B) Tally of the Phyla that I-E, I-F, I-C and II-C CRISPRs originate from and relation to leader motifs. (C) IHF-regulated CRISPR loci predicted to rapidly acquire new spacers. (D) Summary of leader motifs found in Campylobacter and Neisseria spp.
II-C CRISPR loci. Data S3. Analysis of I-E leader motifs found adjacent to non-canonical integration sites in vivo in E. coli, Related to STAR methods and Figures 3 and S5.
(A) Identification of I-E leader motifs and repeat motifs in sequences flanking both sides of non-canonical integration sites. (B) Summary of top 25 unique integration sites across 4 biological replicates reported in Nivala et al., 2018.
Links
Where it is published
- DOI doi.org/10.17632/86rvwfz34r.1 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Earth & Environmental Science
- Inferred from text
- Tabular 65%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/86rvwfz34r.1 | 9 h ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[modality].local:modality:tabular | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |