Data · dataset · 2019
Genome-wide association study and cost-efficient genomic predictions for growth and fillet yield in Nile tilapia (Oreochromis niloticus)
Listed in DataCite
Description
Dataset to GWAS, genomic prediction and imputation analysis for the paper " Genome-wide association study and cost-efficient genomic predictions for growth and fillet yield in Nile tilapia ( Oreochromis niloticus )". Furthermore, supplemental figures are avaliable ( doi.org/10.1534/g3.119.400116). Figure S1.
Correlations between observed and imputed genotypes for each SNP for imputation from low-density (LD3K) to high-density (HD) panel in Nile tilapia using parents (n = 108) and 20% of offspring (n = 226) genotyped with the HD panel as the reference set and 80% of offspring (n = 904) as the validation set. The black line indicates the mean imputation accuracy. Figure S2.
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Correlations between observed and imputed genotypes for each SNP for imputation from low-density (LD1K) to high-density (HD) in Nile tilapia using parents (n = 108) and 20% of the offspring (n = 226) genotyped with the HD panel as the reference set and 80% of the offspring (n = 904) as the validation set. The black line indicates the mean imputation accuracy. Figure S3.
Correlations between observed and imputed genotypes for each SNP for imputation from low-density (LD0.5K) to high-density (HD) in Nile tilapia using parents (n = 108) and 20% of offspring (n = 226) genotyped with the HD panel as the reference set and 80% of the offspring (n = 904) as the validation set. The black line indicates the mean imputation accuracy. Figure S4.
Genotyping cost reduction (%) compared to scenario A, where all animals are genotyped using a HD panel.
Links
Where it is published
- Repository landing page figshare.com/articles/Tilapia_GWAS_GS_Imputation/7751780/3 ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.7751780.v3 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.7751780.v3 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.7751780.v3 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Agriculture, forestry, and fisheries
- Inferred from text
- Fisheries sciences 73%
Related
- Has versionGenome-wide association study and cost-efficient genomic predictions for growth and fillet yield in Nile tilapia (Oreochromis niloticus)
- Possibly the same asGenome-wide association study and cost-efficient genomic predictions for growth and fillet yield in Nile tilapia (Oreochromis niloticus)
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.7751780.v3 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].anzsrc:group:3005 | enrichment · DataCite | taxonomy-embedding@1.1.0 | title+keywords+description (73%) |
| concepts[field].fos:agriculture-forestry-and-fisheries | source · DataCite | connector:datacite@1.0.0 | |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |