Data · collection
Multidimensional 'omics' characterization of microbial metabolism and dissolved organic matter in Antarctica
Listed in NASA Earthdata CMR
Uncovering the dynamics of dissolved organic matter (DOM) is central to an understanding of the global carbon cycle, as organic material from lakes, streams, oceans and soils passes through this pool.
Description
DOM acts as a key energy source for microbes in many ecosystems and therefore can affect regional nutrient cycling patterns. For example, preliminary results suggest that organisms isolated from a supraglacial stream on Cotton Glacier, Antarctica, may be important in DOM cycling in this relatively simple, low temperature system.
However, little is known about the functional attributes of the microbes that interact with DOM in the environment. This project will use state-of-the-art genomics, proteomics and metabolomics approaches to understand the mechanisms by which two microbial isolates, CG3 and CG9_1, affect DOM cycling. Liquid chromatography-mass spectrometry will also be used to better characterize the microbially-derived DOM from this ecosystem.
Read the rest (2 more)
This project will support the research and training of one undergraduate and two graduate students. Results will be widely disseminated through publications as well as through presentations at national and international meetings. In addition, raw data will be made available through open-access databases.
Understanding the relationship between cold-adapted microbial metabolisms and DOM pools is important as more than 90% of the Earth's oceans are below 5 degrees Celsius.
Links
Get the data
- ncbi.nlm.nih.gov /assembly/GCA_000751355.1 ↗
Janthinobacterium sp. CG23_2 genome sequence has been deposited in DDBJ/EMBL/GenBank under accession no. GCA_001298775.1
download · from NASA CMR
- Respiration Metadata usap-dc.org/view/dataset/601076 ↗
download · from NASA CMR
- FT-ICR MS Metadata usap-dc.org/view/dataset/601077 ↗
download · from NASA CMR
- UPLC-Q-TOF data of Cotton Glacier exometabolites usap-dc.org/view/dataset/601089 ↗
download · from NASA CMR
- ncbi.nlm.nih.gov /bioproject/PRJEB6335 ↗
Polaromonas sp. Strain CG9_12 draft whole-genome sequences have been deposited at DDBJ/EMBL/GenBank under BioProject number PRJEB6335 and whole genome accession numbers: CCJP01000001-CCJP01000007
download · from NASA CMR
- ncbi.nlm.nih.gov /nuccore/APFF00000000 ↗
Janthinobacterium�sp. Strain CG3 whole-genome shotgun project has been deposited at DDBJ/EMBL/GenBank under accession number APFF01000000
download · from NASA CMR
Documentation and papers
- NSF Award Abstract #1141978 nsf.gov/awardsearch/showAward.do?AwardNumber=1141978 ↗
documentation · from NASA CMR
Catalogue records · 2
- CMR record cmr.earthdata.nasa.gov/search/concepts/C2532070580-AMD_USAPDC.html ↗
catalogue entry · from NASA CMR
- CMR UMM-JSON cmr.earthdata.nasa.gov/search/concepts/C2532070580-AMD_USAPDC.umm_json ↗
metadata API · from NASA CMR
Topics
- Stated by source
- Cyanobacteria (Blue-Green Algae) · Not provided
- Inferred from text
- Mass spectrometry 65% · Organic geochemistry 78%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NASA Earthdata CMR | C2532070580-AMD_USAPDC | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[field].anzsrc:field:370304 | enrichment · NASA CMR | taxonomy-embedding@1.1.0 | title+keywords+description (78%) |
| concepts[measured_variable].gcmd:earth-science/biological-classification/bacteria-archaea/cyanobacteria-blue-green-algae | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[modality].local:modality:mass-spectrometry | enrichment · NASA CMR | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[platform].gcmd_platform:not-provided | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| description | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/Abstract |
| spatial | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/SpatialExtent |
| temporal | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/TemporalExtents |
| title | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/EntryTitle |
| version_label | source · NASA CMR | connector:nasa_cmr@1.0.0 |