Concatenation and species tree methods exhibit statistically indistinguishable accuracy under a range of simulated conditions

Trees are in newick format but .nex extension needed for simulation script to work simulation.pl : Perl script to simulate 540 gene trees with corresponding 1000bp sequences for all 50 species trees at both tree depths and with varying number of individuals per species. Requires seqgen and ms in same directory to run mbconcat2.py : Python script to concatenate by three, nine and 27 and run MrBayes.

Nexus files for each species tree must be in own directory. Input and output directories need to be provided