Data · dataset · 2024
Genome-Wide Association Study of Metabolic Traits in the Duckweed Spirodela polyrhiza
Listed in Teesside University Research Data Repository
This dataset archives raw data and scripts for GWAS and analysis of metabolite contents in the giant duckweed Spirodela polyrhiza.
Description
In our study we aim on identifying the genetic basis controlling free metabolite contents and growth in S. polyrhiza. A total of 42 free metabolites were extracted from 137 genotypes and correlated with fitness parameters.
Genetic associations with these metabolic traits were determined using GWAS. Metabolite contents were determined using LC-MS. Candidate gene expression was checked with qPCR.
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All scripts were written using R (version 4.2.0) and all GWAS were conducted in a macOS (version 10.14.6)/conda environment using the vcf2gwas platform.
Links
Where it is published
- DOI doi.org/10.17632/xwsxpfcysd.1 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science · Statistical and quantitative genetics
- Inferred from text
- Mass spectrometry 65%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/xwsxpfcysd.1 | 3 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].anzsrc:field:310207 | mapping · researchdata tees ac uk | vocabulary-mapper@1.0.0 | keywords['Quantitative Genetics'] |
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:engineering | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[modality].local:modality:mass-spectrometry | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |