Omics · study · 2026
Transcriptome analysis of three Bacillus cereus strains comparing non-conditioned growth medium (nk) with conditioned (k; pre-incubated with CaCo-2 cells), accomplished by RNA sequencing
Listed in NCBI GEO
Enteropathogenic Bacillus cereus can cause toxico-infections manifesting in diarrhea and abdominal pain.
Description
It is still not completely understood why individual isolates differ in enterotoxin production and pathogenicity, and which signals trigger toxicity in the host environment. The overall transcriptional response of three formerly well-characterized strains to a simulated intestinal environment was assessed in the present study.
Two high toxic strains F837/76 = MHI 1505 and NVH 0075-95 = MHI 3053, and one low toxic strain RIVM BC90 = MHI 3178 were investigated.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE284nnn/GSE284237 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE284237 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1198047 ncbi.nlm.nih.gov/bioproject/PRJNA1198047 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE284237 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |