Omics · dataset · 2026
Cell death-inducing effectors in the latent necrotrophic pathogen Cercospora zeina of maize
Listed in ZivaHub and Deakin Research Online and DMU Figshare and HKU DataHub and Swinburne Figshare and DaYta Ya Rona and SUNScholarData and figshare and Loughborough Research Repository and GRANTS Data and UP Research Data Repository — shown once because both records carry DOI 10.25403/upresearchdata.32972570.v1
Description
<p dir="ltr">The datasets underpin a PhD study titled "Transcriptomics and structural phylogenetics reveals cell death-inducing effectors in the latent necrotrophic pathogen Cercospora zeina of maize." This fungal pathogen enters the stomata, developing asymptomatically, without producing haustoria-like structures for up to 28 days before symptoms develop. RNA sequencing was used to characterise the transcriptomic dynamics during infection, providing insights into the molecular mechanisms supporting in-planta pathogen development and enabling investigation of effector expression during this time.
Two distinct transcriptional waves were identified during the infective period. The first wave was characterized by limited growth despite the expression of genes involved in basic cellular processes and immune evasion. In contrast, the second wave was characterised by exponential growth and enrichment of genes associated with detoxification and carbohydrate catabolism, collectively supporting C. zeina as a latent necrotroph.
Read the rest (2 more)
A total of 140 differentially expressed effector genes were identified, with most being upregulated in the mid-stage during the transition to necrotrophy. During this stage, structurally related members of the NIS1 effector family were expressed, including a previously undescribed NIS1 variant, CzNIS1b. Transient expression of CzNIS1b in Nicotiana benthamiana induced a cell death response similar to that of canonical NIS1 orthologs, despite structural models revealing an atypical α-helix at the C-terminus.</p><p><br></p><p dir="ltr">To identify additional cell death-inducing effectors, structural phylogenetics was used to define effector structural families (ESFs) and identify candidate secreted effector proteins (CSEPs) from C. zeina with potential cell death-inducing activity.
C. zeina CSEPs clustering with functionally characterized cell death-inducing effector orthologs within ESFs were hypothesized to induce cell death when transiently expressed in Nicotiana benthamiana. Indeed, C. zeina CSEPs from three distinct cell death-inducing families were chosen for biological validation and shown to induce cell death in N. benthamiana. Expression analysis showed that C. zeina ESFs generally contained no more than two highly expressed genes, suggesting limited structural redundancy and the possibility for effector gene silencing during infection. </p>
Links
Where it is published
- DOI doi.org/10.25403/upresearchdata.32972570.v1 ↗
DOI / persistent id · from zivahub uct ac za
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from zivahub uct ac za
Topics
- From keywords
- Astronomy & Astrophysics · Chemistry · Chemistry · Computer Science & AI · Computer Science & AI · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Economics & Finance · Economics & Finance · Engineering · Engineering · Engineering · Engineering · Humanities · Humanities · Humanities · Humanities · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Materials Science · Mathematics & Statistics · Medicine & Health · Medicine & Health · Ocean & Atmospheric Science · Plant pathology · Plant pathology · Plant pathology · Plant pathology · Plant pathology · Plant pathology · Plant pathology · Plant pathology · Plant pathology · Plant pathology · Plant pathology · Psychology & Behavioral Science · RNA sequencing · RNA sequencing · RNA sequencing · RNA sequencing · RNA sequencing · RNA sequencing · RNA sequencing · RNA sequencing · RNA sequencing · RNA sequencing · RNA sequencing · Social Science · Social Science · Social Science · Social Science
- Inferred from text
- Sequencing 75%
Provenance · 11 source records, 75 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ZivaHub | oai:figshare.com:article/32972570 | 5 d ago | JSON v1 |
| Deakin Research Online | oai:figshare.com:article/32972570 | 5 d ago | JSON v1 |
| DMU Figshare | oai:figshare.com:article/32972570 | 5 d ago | JSON v1 |
| HKU DataHub | oai:figshare.com:article/32972570 | 5 d ago | JSON v1 |
| Swinburne Figshare | oai:figshare.com:article/32972570 | 5 d ago | JSON v1 |
| DaYta Ya Rona | oai:figshare.com:article/32972570 | 5 d ago | JSON v1 |
| SUNScholarData | oai:figshare.com:article/32972570 | 5 d ago | JSON v1 |
| figshare | oai:figshare.com:article/32972570 | 4 d ago | JSON v1 |
| Loughborough Research Repository | oai:figshare.com:article/32972570 | 4 d ago | JSON v1 |
| GRANTS Data | oai:figshare.com:article/32972570 | 4 d ago | JSON v1 |
| UP Research Data Repository | oai:figshare.com:article/32972570 | 4 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].anzsrc:field:310805 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Plant pathology'] |
| concepts[field].anzsrc:field:310805 | mapping · dayta nwu ac za | vocabulary-mapper@1.0.0 | keywords['Plant pathology'] |
| concepts[field].anzsrc:field:310805 | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['Plant pathology'] |
| concepts[field].anzsrc:field:310805 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Plant pathology'] |
| concepts[field].anzsrc:field:310805 | mapping · dro deakin edu au | vocabulary-mapper@1.0.0 | keywords['Plant pathology'] |
| concepts[field].anzsrc:field:310805 | mapping · figshare dmu ac uk | vocabulary-mapper@1.0.0 | keywords['Plant pathology'] |
| concepts[field].anzsrc:field:310805 | mapping · grantsdata jst go jp | vocabulary-mapper@1.0.0 | keywords['Plant pathology'] |
| concepts[field].anzsrc:field:310805 | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['Plant pathology'] |
| concepts[field].anzsrc:field:310805 | mapping · figshare swinburne edu au | vocabulary-mapper@1.0.0 | keywords['Plant pathology'] |
| concepts[field].anzsrc:field:310805 | mapping · scholardata sun ac za | vocabulary-mapper@1.0.0 | keywords['Plant pathology'] |
| concepts[field].anzsrc:field:310805 | mapping · researchdata up ac za | vocabulary-mapper@1.0.0 | keywords['Plant pathology'] |
| concepts[field].local:field:astronomy | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare dmu ac uk | connector:figshare_dmu_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · grantsdata jst go jp | connector:grantsdata_jst_go_jp@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · dayta nwu ac za | connector:dayta_nwu_ac_za@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · dro deakin edu au | connector:dro_deakin_edu_au@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · scholardata sun ac za | connector:scholardata_sun_ac_za@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare swinburne edu au | connector:figshare_swinburne_edu_au@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · dayta nwu ac za | connector:dayta_nwu_ac_za@1.0.0 | |
| concepts[field].local:field:engineering | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:engineering | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · dayta nwu ac za | connector:dayta_nwu_ac_za@1.0.0 | |
| concepts[field].local:field:humanities | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:humanities | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · grantsdata jst go jp | connector:grantsdata_jst_go_jp@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare dmu ac uk | connector:figshare_dmu_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scholardata sun ac za | connector:scholardata_sun_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · dayta nwu ac za | connector:dayta_nwu_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare swinburne edu au | connector:figshare_swinburne_edu_au@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · dro deakin edu au | connector:dro_deakin_edu_au@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:materials-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:mathematics-statistics | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:psychology-behavioral | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · dayta nwu ac za | connector:dayta_nwu_ac_za@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:social-science | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[modality].local:modality:rna-seq | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['RNA sequencing'] |
| concepts[modality].local:modality:rna-seq | mapping · scholardata sun ac za | vocabulary-mapper@1.0.0 | keywords['RNA sequencing'] |
| concepts[modality].local:modality:rna-seq | mapping · dayta nwu ac za | vocabulary-mapper@1.0.0 | keywords['RNA sequencing'] |
| concepts[modality].local:modality:rna-seq | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['RNA sequencing'] |
| concepts[modality].local:modality:rna-seq | mapping · figshare swinburne edu au | vocabulary-mapper@1.0.0 | keywords['RNA sequencing'] |
| concepts[modality].local:modality:rna-seq | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['RNA sequencing'] |
| concepts[modality].local:modality:rna-seq | mapping · figshare dmu ac uk | vocabulary-mapper@1.0.0 | keywords['RNA sequencing'] |
| concepts[modality].local:modality:rna-seq | mapping · grantsdata jst go jp | vocabulary-mapper@1.0.0 | keywords['RNA sequencing'] |
| concepts[modality].local:modality:rna-seq | mapping · dro deakin edu au | vocabulary-mapper@1.0.0 | keywords['RNA sequencing'] |
| concepts[modality].local:modality:rna-seq | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['RNA sequencing'] |
| concepts[modality].local:modality:rna-seq | mapping · researchdata up ac za | vocabulary-mapper@1.0.0 | keywords['RNA sequencing'] |
| concepts[modality].local:modality:sequencing | enrichment · zivahub uct ac za | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/description |
| license | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/rights |
| publication_date | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| title | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/title |