Omics · study · 2026
Characterization of two H-NS-family proteins in the opportunistic pathogen, Chromobacterium violaceum.
Listed in NCBI GEO
Histone-like nucleoid structuring (H-NS) proteins silence horizontally-acquired genes, facilitating their the acquisition and integration of important traits such as virulence and antibiotic resistance in bacterial pathogens.
Description
In this work, we describe the H-NS proteins in the environmental opportunistic pathogen Chromobacterium violaceum. We show that C. violaceum encodes two H-NS proteins, Chn1 and Chn2.
Transcriptomic analyses revealed that Chn1 is the predominant H-NS-family protein in C. violaceum, repressing many genes, while Chn2 is largely compensatory, exhibiting a phenotype only in a double mutant, chn1 chn2 strain. This is reinforced by in silico analyses showing that chn1 is conserved throughout Chromobacterium, while chn2 is species-dependent, and likely horizontally-acquired. The expression of 213 genes, including the Chromobacterium pathogenic island 2 (Cpi-2), was de-repressed in the chn1 chn2 mutant.
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Phenotypic analyses revealed altered virulence, violacein production, motility and acid and osmolarity tolerance in chn1 and chn1 chn2 mutant strains, demonstrating the prominent role of these H-NS-family proteins as global regulators of virulence-associated traits in C. violaceum.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE304nnn/GSE304743 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE304743 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1298948 ncbi.nlm.nih.gov/bioproject/PRJNA1298948 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Genetics 70%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE304743 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3105 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (70%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |