Omics · dataset · 2024
Small RNA sequencing of MODE-K cell line
Listed in Teesside University Research Data Repository
16S ribosomal DNA (rDNA) sequencing is a powerful technique for identifying and comparing bacteria within a given sample.
Description
It focuses on the 16S ribosomal RNA gene, a highly conserved region in the bacterial genome that contains hypervariable regions useful for distinguishing different bacterial species. In this study, 16S rDNA sequencing was utilized to profile the microbiome compositions of samples derived from MODE-K cells line.
The aim was to investigate the bacterial diversity and relative abundance in each sample type. Small RNA sequencing is a technique that allows for the comprehensive profiling of small RNAs, including microRNAs (miRNAs), small interfering RNAs (siRNAs), and piwi-interacting RNAs (piRNAs). These small RNAs play critical roles in gene regulation and can provide insights into cellular processes and disease mechanisms.
Read the rest (1 more)
This study employed small RNA sequencing to analyze the small RNA populations in samples from MODE-K cell line. The goal was to understand the expression patterns and regulatory roles of small RNAs under the treatment of stachyose.
Links
Where it is published
- DOI doi.org/10.17632/dwjjk7dpcv.1 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Sequencing · Social Science
- Inferred from text
- Bioinformatics and computational biology 69% · Disease 75% · RNA sequencing 75%
Provenance · 1 source records, 14 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/dwjjk7dpcv.1 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:group:3102 | enrichment · researchdata tees ac uk | taxonomy-embedding@1.0.0 | title+keywords+description (69%) |
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:engineering | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | mapping · researchdata tees ac uk | vocabulary-mapper@1.0.0 | keywords['High-Throughput Sequencing'] |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |