Omics · study · 2026
Transcriptome profiling of Arabidopsis thaliana galls induced by Meloidogyne javanica at 14 days post-infection
Listed in NCBI GEO
This study investigates transcriptional changes associated with the maintenance stage of nematode-induced feeding sites in Arabidopsis thaliana.
Description
RNA-seq analysis was performed on galls induced by Meloidogyne javanica at 14 days post-infection (dpi) and on equivalent non-infected root segments used as controls. Each condition included three independent biological replicates.
These data were generated to characterize gene expression changes associated with gall development and maintenance.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE320nnn/GSE320192 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE320192 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1422635 ncbi.nlm.nih.gov/bioproject/PRJNA1422635 ↗
project · from NCBI GEO
- PubMed 42196344 pubmed.ncbi.nlm.nih.gov/42196344 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Arabidopsis thaliana · Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Agricultural biotechnology 70% · RNA sequencing 65%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE320192 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3001 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (70%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:3702 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |