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Data · dataset · 2024

CO1 Amplicon Sequence Variants of soil and leaf litter arthropod communities collected at Malaise traps from the Insect Biome Atlas project in Sweden

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Description

Amplicon Sequence Variants of 418bp of CO1 from soil and leaf litter arthropod communities collected at Malaise traps from the Insect Biome Atlas project (insectbiomeatlas.org/) in Sweden, as described in the IBA data paper (doi.org/10.1038/s41597-025-05151-0) . This dataset was published via the SBDI ASV portal (asv-portal.biodiversitydata.se/) , and has been updated from 'Metadata only' to 'Occurrence' type.

Occurrence data were compiled from the following IBA Figshare items: Processed ASV data from the Insect Biome Atlas Project v3: (figshare.scilifelab.se/articles/dataset/Processed_ASV_data_from_the_Insect_Biome_Atlas_Project/27202368/3) - cleaned_noise_filtered_cluster_taxonomy_SE.tsv.gz (figshare.scilifelab.se/ndownloader/files/50067528) - spikeins_tax_SE.tsv.gz (figshare.scilifelab.se/ndownloader/files/50067531) Amplicon sequence variants from the Insect Biome Atlas project v6: (figshare.scilifelab.se/articles/dataset/Amplicon_sequence_variants_from_the_Insect_Biome_Atlas_project/25480681/6) - co1_asv_counts_se.tsv.gz (figshare.scilifelab.se/ndownloader/files/46381132) - co1_asv_seqs_se.fasta.gz (figshare.scilifelab.se/ndownloader/files/46381138) The following samples were excluded from this resource due to sequencing failure: P25259_1390, P25259_1407, P25259_1411, P25259_1420, P25259_1422, P25259_1423, P25259_1428, P25259_1431, P25259_1435, P25259_1436, P25259_1439, P25259_1440, P25259_1444, P25259_1452, P25259_1460, P25259_1467, P25259_1469, P25259_1476, P25259_1591, P25259_1594, P25259_1641, P25259_1649; or lack of non-zero counts for annotated ASVs: P25259_1438, P25259_1455, P25259_1471, P25259_1475, P25259_1586, P25259_1661, P25259_1742.

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Inferred from text
Evolutionary biology 72% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
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Researchdata.seoai:researchdata.se:gbif-sweden-10-15468-783jyb/012 d agoJSON v1
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concepts[field].anzsrc:group:3104enrichment · researchdata setaxonomy-embedding@1.1.0title+keywords+description (72%)
concepts[field].local:field:earth-environmentalmapping · researchdata seconnector:researchdata_se@1.0.0
concepts[field].local:field:life-sciencesmapping · researchdata seconnector:researchdata_se@1.0.0
concepts[modality].local:modality:sequencingenrichment · researchdata sekeyword-concept-rules@1.0.0title+description (75%)
descriptionsource · researchdata seconnector:researchdata_se@1.0.0/metadata/dc/description
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