Table · study · 2026
Contrasting epigenetic dynamics in chromosome arms and pericentromeres during ROS1-induced plant immune memory [ONT-seq]
Listed in NCBI GEO
Induced resistance against (hemi-)biotrophic pathogens can be triggered in Arabidopsis by 17β-estradiol (E2)-dependent activation of ROS1 in plants carrying the XVE:ROS1-YFP transgene.
Description
Here, we use long-read Oxford Nanopore Technologies sequencing (ONT-seq) and the centromere-complete Arabidopsis genome assembly Col-CEN to characterise genome-wide changes in DNA methylation associated with the establishment of ROS1-mediated resistance, with a particular focus on pericentromeric and centromeric regions.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE304nnn/GSE304524 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE304524 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1301867 ncbi.nlm.nih.gov/bioproject/PRJNA1301867 ↗
project · from NCBI GEO
Topics
- Stated by source
- Arabidopsis thaliana · Other · Third-party reanalysis
- From keywords
- Life Sciences
- Inferred from text
- Agricultural biotechnology 70% · Sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE304524 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3001 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (70%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[method].geo_series_type:third-party-reanalysis | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:3702 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |