Omics · study · 2026
Oxygen-dependent transcriptional landscape of equine skeletal muscle derived cells.
Listed in NCBI GEO
Growing interest in equine regenerative biology and oxygen-dependent muscle physiology has highlighted the need for reliable in vitro models that accurately reflect the behaviour of equine skeletal muscle cells.
Description
In this study, we established an equine skeletal muscle cell line derived from post-mortem tissue. We confirmed its myogenic identity using qPCR analysis of key myogenic regulators, including MYOD1, MYF5, MYOG, and PAX7.
This cell system was then used to characterise transcriptional responses to differential oxygen conditions via whole-transcriptome profiling using next-generation sequencing (NGS). By exposing cultures to normoxia and controlled hypoxia (1% and 3% O₂) for defined time periods, we aimed to investigate how oxygen availability shapes the transcriptional landscape of equine skeletal muscle cells and to provide a robust platform for future studies on muscle adaptation, metabolism, and environmental stress responses.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE334nnn/GSE334758 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE334758 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1476284 ncbi.nlm.nih.gov/bioproject/PRJNA1476284 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75% · Zoology 70%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE334758 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3109 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (70%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |