Data · dataset · 2022
Deecker_Shayna_R_202211_PhD_datatables
Listed in Borealis
Much of the data used to conduct the bioinformatic analyses in Chapter 3 of my PhD thesis consists of large tables that are unsuitable for the thesis format.
Description
They are available here under the filename: Deecker_Shayna_R_202211_PhD_datatables.xlsx. The contents of the tables are as follows: Table S1: The Legionella pneumophila isolates used in this study.
Table S2: The hits for each L. pneumophila spacer from metagenomic sequences. Table S3: The hits for each L. pneumophila spacer in complete and/or draft genomes. Table S4: The accession numbers and Microviridae subfamily classifications for the major capsid phylogeny tree.
Read the rest (1 more)
Table S5: The mobile elements predicted by both PhiSpy and VirSorter. Table S6: Orthologous groups for LME-1 and their predicted function by BLASTp against the viral database (taxid:10239) and by HHpred against the Uniprot SwissProt viral database (Uniprot-SwissProt-versio-70_23_aug_2020) with a probability cutoff of >70%. Table S7: List of CRISPR-Cas spacers from all examined L. pneumophila isolates.
Links
Where it is published
- Dataverse dataset page borealisdata.ca/dataset.xhtml?persistentId=doi%3A10.5683%2FSP3%2F4MWFOI ↗
landing page · from borealisdata ca
- DOI doi.org/10.5683/sp3/4mwfoi ↗
DOI / persistent id · from borealisdata ca
Catalogue records · 1
- Dataverse API borealisdata.ca/api/datasets/:persistentId/?persistentId=doi%3A10.5683%2FSP3%2… ↗
metadata API · from borealisdata ca
Topics
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Borealis | doi:10.5683/SP3/4MWFOI | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].dataverse_subject:other | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | /subjects |
| concepts[modality].local:modality:tabular | enrichment · borealisdata ca | keyword-concept-rules@1.0.0 | title+description (65%) |
| created_date | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | |
| description | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | /description |
| publication_date | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | |
| title | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | /name |
| updated_date | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | |
| version_label | source · borealisdata ca | connector:borealisdata_ca@1.0.0 |