Omics · study · 2026
An integrative approach for the genetic analysis of complex traits: combining mutant phenotype and gene expression data identified novel genes impacting yeast replicative lifespan
Listed in NCBI GEO
To examine the structure of the network, we connected the upstream peripheral genes with our validated master regulators based on our computational analysis and connected the master regulators to their downstream core genes by generating additional gene expression data with the master regulator perturbed.
Description
Consistent with the model we proposed, we found that many of the peripheral genes are linked to one or more master regulators, and many of the master regulators are correlated with several peripheral genes.
Furthermore, the master regulators are linked to sets of core genes with strong overlap, covering a broad spectrum of mechanisms known to be important for aging. Our study provides support for the existence of the three-layered structure of the gene regulatory networks underlying complex traits and suggests practical approaches to identify the master regulators.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE305nnn/GSE305491 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305491 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1306090 ncbi.nlm.nih.gov/bioproject/PRJNA1306090 ↗
project · from NCBI GEO
- PubMed 42033077 pubmed.ncbi.nlm.nih.gov/42033077 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Saccharomyces cerevisiae
- From keywords
- Life Sciences
- Inferred from text
- Genome structure and regulation 79%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE305491 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:field:310508 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (79%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:4932 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |