Data · collection · 2022
AB-DB: Force-Field parameters, MD trajectories, QM-based data, and Descriptors of Antimicrobials
Listed in DataCite
AB-DB is and open database of all-atom force-field parameters, molecular dynamics trajectories, quantum-mechanical properties, and curated physico-chemical descriptors of antimicrobial compounds.
Description
The collection stores more than 300 molecules belonging to 25 families that include the most relevant antibiotic classes in clinical use. Traditional descriptors are provided, together with properties obtained with Density Functional Theory calculations and less conventional descriptors extracted from molecular dynamics simulations in explicit solvent.
Force field parameters are provided for each compound.
Links
Where it is published
- Repository landing page springernature.figshare.com/collections/AB-DB_Force-Field_parameters_MD_trajectories_QM-ba… ↗
landing page · from DataCite
- Repository landing page springernature.figshare.com/collections/AB-DB_Force-Field_parameters_MD_trajectories_QM-ba… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.c.5752703 ↗
DOI / persistent id · from DataCite
- DOI doi.org/10.6084/m9.figshare.c.5752703.v1 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 4
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.c.5752703.v1 ↗
metadata API · from DataCite
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.c.5752703 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.c.5752703.v1 ↗
catalogue entry · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.c.5752703 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Basic medicine · Basic medicine
- From keywords
- Biomolecular modelling and design · Molecular medicine
- Inferred from text
- Density functional theory 75%
Provenance · 2 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.c.5752703 | 9 d ago | JSON v1 |
| DataCite | 10.6084/m9.figshare.c.5752703.v1 | 9 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| concepts[field].fos:basic-medicine | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:basic-medicine | source · DataCite | connector:datacite@1.0.0 | |
| concepts[method].local:method:dft | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |