Omics · study · 2026
Transcriptome analyses of Arabidopsis natural accessions Col-0 and IP-Svi-0 at different tempearatures
Listed in NCBI GEO
Plants are sessile organisms; thus they developed sophisticated endogenous mechanisms to detect and respond to various environmental cues .
Description
Our planet has diverse light and temperature conditions, to adopt in such a wide range of climatic conditions plants must have phenotypic plasticity. In addition to phenotypic plasticity plants also have variations in ontogenetic trajectory that results from genetic and epigenetic modifications leading to differential growth response to varying environment.
To ensure successful adaptation and survivability in diverse climatic conditions a number of genetic polymorphisms are accumulated in various natural accessions of Arabidopsis. In this study, we investigated the reasons of photoperiod and temperature insensitive early flowering phenotype of San Vicente (IP-Svi-0) which was collected from San Vicente, Spain (Latitude: 43.39; Longitude: -7.39). Our RNA seq analysis showed decreased expression of MAF1-3 and 5
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE304nnn/GSE304564 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE304564 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1301794 ncbi.nlm.nih.gov/bioproject/PRJNA1301794 ↗
project · from NCBI GEO
- PubMed 41649384 pubmed.ncbi.nlm.nih.gov/41649384 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Arabidopsis thaliana · Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Plant biology 71%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE304564 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3108 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (71%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:3702 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |