Data · dataset · 2026
COBREXA.jl: constraint-based reconstruction and exascale analysis [* Cross-Reference *]
Listed in LORE
Description
Summary
COBREXA.jl is a Julia package for scalable, high-performance constraint-based reconstruction and analysis of very large-scale biological models. Its primary purpose is to facilitate the integration of modern high performance computing environments with the processing and analysis of large-scale metabolic models of challenging complexity. We report the architecture of the package, and demonstrate how the design promotes analysis scalability on several use-cases with multi-organism community models.
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Availability and implementation doi.org/10.17881/ZKCR-BT30 . Contact christophe.trefois@uni.lu , wei.gu@uni.lu ***This entry has been automatically imported via OpenAlex by LIST harvest scripts. Please refer to doi.org/10.1101/2021.06.04.447038 for the original and latest version of the publication***
Links
Where it is published
- Dataverse dataset page lore.list.lu/dataset.xhtml?persistentId=perma%3ALIST.6ENISJ ↗
landing page · from lore list lu
- Persistent identifier lore.list.lu/citation?persistentId=perma%3ALIST.6ENISJ ↗
DOI / persistent id · from lore list lu
Catalogue records · 1
- Dataverse API lore.list.lu/api/datasets/:persistentId/?persistentId=perma%3ALIST.6ENISJ ↗
metadata API · from lore list lu
Topics
- Stated by source
- Chemistry · Medicine, Health and Life Sciences
- From keywords
- Architecture · Chemistry · Computer Science & AI · Engineering · Life Sciences · Medicine & Health
Provenance · 1 source records, 14 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| LORE | perma:LIST.6ENISJ | 3 h ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:3301 | mapping · lore list lu | vocabulary-mapper@1.0.0 | keywords['Architecture'] |
| concepts[field].dataverse_subject:chemistry | source · lore list lu | connector:lore_list_lu@1.0.0 | /subjects |
| concepts[field].dataverse_subject:medicine-health-and-life-sciences | source · lore list lu | connector:lore_list_lu@1.0.0 | /subjects |
| concepts[field].local:field:chemistry | mapping · lore list lu | connector:lore_list_lu@1.0.0 | /subjects |
| concepts[field].local:field:computer-science-ai | mapping · lore list lu | connector:lore_list_lu@1.0.0 | /subjects |
| concepts[field].local:field:engineering | mapping · lore list lu | connector:lore_list_lu@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · lore list lu | connector:lore_list_lu@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · lore list lu | connector:lore_list_lu@1.0.0 | /subjects |
| created_date | source · lore list lu | connector:lore_list_lu@1.0.0 | |
| description | source · lore list lu | connector:lore_list_lu@1.0.0 | /description |
| publication_date | source · lore list lu | connector:lore_list_lu@1.0.0 | |
| title | source · lore list lu | connector:lore_list_lu@1.0.0 | /name |
| updated_date | source · lore list lu | connector:lore_list_lu@1.0.0 | |
| version_label | source · lore list lu | connector:lore_list_lu@1.0.0 |