Data · dataset · 2026
Data supporting an auditable sparse-evidence workflow for phage receptor-binding-protein prioritization and Gp17-mediated magnetic capture of Yersinia enterocolitica O:3
Listed in Teesside University Research Data Repository
Version 3 expands the existing dataset to Figures 1–7 and Supplementary Figures S1–S2, with available sources, current captions, provenance mappings and SHA-256 hashes.
Description
V2 history is preserved. No experiments were added, and the frozen 827-candidate analysis, G_pre1/G_pro1, weights, random seed and released software are unchanged.
The dataset supports an auditable workflow for phage receptor-binding-protein prioritization and Gp17-mediated capture of Yersinia enterocolitica O:3. It includes frozen rankings, component ablations/baselines, 10,000 weight perturbations, identifier-masked and strict context-blind rankings, S4/S5A/S5B, the verified-evidence registry, ELISA and magnetic-capture records, and processed-matrix/retail-sample table transcriptions.
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Only Q9T0Z9/Gp17 has complete in-house wet-lab evidence. Ranking robustness evaluates internal stability and implementation reproducibility, not independent predictive accuracy or generalization. Figure 3A's current full-precision derivative uses the same 36 technical wells, the unrounded PBS mean and the existing one-site model.
Display remains 44.38 ± 2.98 μg/mL (estimate ± SE), R² = 0.9904. Original workbooks and historical rounded results are retained. Figure 3B uses raw-record-supported 0.1860; historical Prism 0.1855 remains archived with derivation unestablished.
Numerical and plot-geometry comparisons are separate evidence; geometry does not prove byte-identical export inputs. The new derivative is outside the frozen software release's 18 historical tests/51 output hashes. Source limits are documented: Figure 2 lane labels derive from historical assemblies, not an authenticated loading ledger.
Figure 4 scales are 5 μm in A–C and 10/5/5/10 μm in D(a–d); calibration does not verify specimen identity or unrecorded control blocking. Figure 5's 87.2% is a historical count index without recoverable volume normalization or independent-repeat definition. Figure 7 uses M+6 sample lanes; the wider seven-lane source is retained, but the seventh identity and omission reason are unrecorded.
S1/S2 map to assembly components; independent acquisition originals and sample keys remain unavailable. Figure 7 is qualitative low-input evidence, S1 pilot qualitative concordance, and S2 amplified-readout compatibility, not a formal detection limit. See 06_image_manifest/FIGURE_COVERAGE.csv, V3_FIGURE_PROVENANCE_STATUS.md and Figure3_source_precision_conclusion.md, plus 00_README.
Software remains separately archived: doi.org/10.5281/zenodo.22625899, v1.0.0, commit 604ee08829ac5ee628f4aa0c98fbb5a21e3c3e17. Dataset licensing does not replace software/third-party licences.
Links
Where it is published
- DOI doi.org/10.17632/49smydnjjn.3 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Bioinformatics and computational biology 73% · Tabular 65%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/49smydnjjn.3 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].anzsrc:group:3102 | enrichment · researchdata tees ac uk | taxonomy-embedding@1.0.0 | title+keywords+description (73%) |
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:engineering | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[modality].local:modality:tabular | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |