Data · dataset
[Arctic Bacterial Genomes] - Under the ice bacterial cultures and genome sequences from the R/V Kronprins Haakon in the Arctic Ocean from May 18 to 21, 2023 (Collaborative Research: Drivers and effects of latent phage activation in marine SAR11)
Listed in Biological and Chemical Oceanography Data Management Office (BCO-DMO) ERDDAP
Bacteria were cultured and sequenced from the Arctic Ocean under 2-meter-thick sea ice to identify patterns of gene, loss, and rearrangement.
Description
Cultures were obtained by high-throughput dilution to extinction cultivation using cryopreserved samples. Bacteria selected for genome sequencing were grown in 1 liter of Puget Sound seawater media and sequenced using the Oxford Nanopore Technologies (ONT) R10.4.1 Flongle flow cells with the SQK-RAD114 rapid library prep kit (Oxford Nanopore Technologies, Oxford, United Kingdom).
Time-series data indicate that this collection represents up to 60% of the marine bacterial community in the Arctic. Their complete genomes provide insights into the evolutionary processes that underlie diversity and adaptation to the Arctic Ocean.
Links
Where it is published
- ERDDAP dataset info erddap.bco-dmo.org/erddap/info/bcodmo_dataset_965379_v1/index.html ↗
landing page · from erddap bco dmo org
Documentation and papers
- Dataset documentation osprey.bco-dmo.org/dataset/965379 ↗
documentation · from erddap bco dmo org
Catalogue records · 1
- ERDDAP tabledap access form erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_965379_v1.html ↗
metadata API · from erddap bco dmo org
Topics
- From keywords
- Ocean & Atmospheric Science
- Inferred from text
- Environmental biotechnology 69% · Genome sequencing 75% · Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Biological and Chemical Oceanography Data Management Office (BCO-DMO) ERDDAP | bcodmo_dataset_965379_v1 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | |
| concepts[field].anzsrc:group:4103 | enrichment · erddap bco dmo org | taxonomy-embedding@1.1.0 | title+keywords+description (69%) |
| concepts[field].local:field:ocean-atmospheric | mapping · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | |
| concepts[modality].local:modality:genome-sequencing | enrichment · erddap bco dmo org | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · erddap bco dmo org | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | /summary |
| spatial | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | |
| title | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | /title |