Constarium
← Search

Data · dataset

[Arctic Bacterial Genomes] - Under the ice bacterial cultures and genome sequences from the R/V Kronprins Haakon in the Arctic Ocean from May 18 to 21, 2023 (Collaborative Research: Drivers and effects of latent phage activation in marine SAR11)

Listed in Biological and Chemical Oceanography Data Management Office (BCO-DMO) ERDDAP

Bacteria were cultured and sequenced from the Arctic Ocean under 2-meter-thick sea ice to identify patterns of gene, loss, and rearrangement.

Description

Cultures were obtained by high-throughput dilution to extinction cultivation using cryopreserved samples. Bacteria selected for genome sequencing were grown in 1 liter of Puget Sound seawater media and sequenced using the Oxford Nanopore Technologies (ONT) R10.4.1 Flongle flow cells with the SQK-RAD114 rapid library prep kit (Oxford Nanopore Technologies, Oxford, United Kingdom).

Time-series data indicate that this collection represents up to 60% of the marine bacterial community in the Arctic. Their complete genomes provide insights into the evolutionary processes that underlie diversity and adaptation to the Arctic Ocean.

Links

Where it is published

Documentation and papers

Catalogue records · 1

Topics

Inferred from text
Environmental biotechnology 69% · Genome sequencing 75% · Sequencing 75%
Provenance · 1 source records, 8 field assertions
SourceKeyLast seenRaw
Biological and Chemical Oceanography Data Management Office (BCO-DMO) ERDDAPbcodmo_dataset_965379_v111 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · erddap bco dmo orgconnector:erddap_bco_dmo_org@1.0.0
concepts[field].anzsrc:group:4103enrichment · erddap bco dmo orgtaxonomy-embedding@1.1.0title+keywords+description (69%)
concepts[field].local:field:ocean-atmosphericmapping · erddap bco dmo orgconnector:erddap_bco_dmo_org@1.0.0
concepts[modality].local:modality:genome-sequencingenrichment · erddap bco dmo orgkeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:sequencingenrichment · erddap bco dmo orgkeyword-concept-rules@1.0.0title+description (75%)
descriptionsource · erddap bco dmo orgconnector:erddap_bco_dmo_org@1.0.0/summary
spatialsource · erddap bco dmo orgconnector:erddap_bco_dmo_org@1.0.0
titlesource · erddap bco dmo orgconnector:erddap_bco_dmo_org@1.0.0/title