Omics · dataset · 2018
FPKM values computed from RNA-seq measurements of single cells taken from developing forelimbs of C57BL/6 mice
Listed in CaltechDATA
This table displays FPKM values computed from RNA-seq measurements of single cells taken from developing forelimbs of C57BL/6 mice.
Description
The reads were aligned with STAR version 2.5.2a and quantifications made using RSEM version 1.2.15 We used index files provided by www.encodeproject.org. For STAR we used index files from ENCFF483PAE, and RSEM index files ENCFF064YNQ, which were built from male mm10, the GENCODE M4 comprehensive set with tRNAs and ERCC spike ins which all available from ENCFF533JRE.
Links
Where it is published
- CaltechDATA record data.caltech.edu/records/8yyyj-y0516 ↗
landing page · from data caltech edu
- DOI doi.org/10.22002/d1.1096 ↗
DOI / persistent id · from data caltech edu
Catalogue records · 1
- InvenioRDM API data.caltech.edu/api/records/8yyyj-y0516 ↗
metadata API · from data caltech edu
Topics
- Stated by source
- C57BL/6 · Forelimb · FPKM · RNA-seq · Single Cell
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · RNA sequencing · Social Science
- Inferred from text
- Tabular 65%
Provenance · 1 source records, 18 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| CaltechDATA | 8yyyj-y0516 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:engineering | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:humanities | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:social-science | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[modality].local:modality:rna-seq | mapping · data caltech edu | vocabulary-mapper@1.0.0 | keywords['RNA-seq'] |
| concepts[modality].local:modality:tabular | enrichment · data caltech edu | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[topic].invenio_subject:data_caltech_edu:c57bl-6 | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:forelimb | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:fpkm | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:rna-seq | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:single-cell | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| description | source · data caltech edu | connector:data_caltech_edu@1.0.0 | /metadata/description |
| publication_date | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| title | source · data caltech edu | connector:data_caltech_edu@1.0.0 | /metadata/title |
| updated_date | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| version_label | source · data caltech edu | connector:data_caltech_edu@1.0.0 |