Data · dataset · 2024
cryo-ET tutorial dataset for template matching - raw frames
Listed in IISH Dataverse
This is the raw electron microscopy data from the pytom template matching tutorial: doi:10.34894/TLGJCM. 10 cryo-EM tilt-series of ER-derived vesicles from HEK293F cells.
Description
Tilt-series collected between +-51 degrees with a 3 degree increment (35 tilts) and cumulative dose of less than 80 e-/A^2. Each tilt was collected as a movie with 8 frames and pixel size of 1.724 A/px (stored as .tif files).
Each tilt-series has an serialEM (.mdoc) file with metadata of the collection. IMPORTANT: Tilt movies in this dataset were already gain-corrected.
Links
Where it is published
- Dataverse dataset page dataverse.nl/dataset.xhtml?persistentId=doi%3A10.34894%2FOLYEFI ↗
landing page · from datasets iisg amsterdam
- DOI doi.org/10.34894/olyefi ↗
DOI / persistent id · from datasets iisg amsterdam
Catalogue records · 1
- Dataverse API dataverse.nl/api/datasets/:persistentId/?persistentId=doi%3A10.34894%2FOLYE… ↗
metadata API · from datasets iisg amsterdam
Topics
- Stated by source
- Computer and Information Science · Medicine, Health and Life Sciences
- From keywords
- Life Sciences · Medicine & Health
- Inferred from text
- Biochemistry and cell biology 68% · Microscopy 75%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| IISH Dataverse | doi:10.34894/OLYEFI | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:3101 | enrichment · datasets iisg amsterdam | taxonomy-embedding@1.1.0 | title+keywords+description (68%) |
| concepts[field].dataverse_subject:computer-and-information-science | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].dataverse_subject:medicine-health-and-life-sciences | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[modality].local:modality:microscopy | enrichment · datasets iisg amsterdam | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| description | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /description |
| publication_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| title | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /name |
| updated_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| version_label | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 |