VarDB2.0 - a proteogenomics database

CanProVar_peptide.fa.txt.zip - a zipped fasta format for variant peptides from CanProVar DB.

Note

CanProVar_peptide.fa is already included in VarDB2.fasta. e.g. variant peptide from non-synonymous SNPs >CanProVar_rs6673641_ZMYM6_P134S_missense_15 CITRHSSPACLPPPSKK the last integer "_15" in the header indicates the position of substituted amino acid in the peptide sequence. "P134S" indicates the position of substituted amino acid in the protein sequence. e.g. variant peptide from COSMIC mutation >COSMIC:ENST00000342988:SMAD4:p.K519E:Substitution-Missense:4 the last integer "4" in the header indicates the position of substituted amino acid in the peptide sequence. "p.K519E" indicates the position of substituted amino acid in the protein sequence. e.g. variant peptide from three frame translated Pseudogenes. >PGOHUM_ENST00000359512.8_PAR_Y_WASH6P_RF2 "RF2" indicates it is translated from the seconding reading frame (starting from second nucleotide) of its transcript with stop codon allowed in the middle. e.g. variant peptide from three frame translated lncRNA. >lncRNA_lnc-MLKL-27:11_RF2 "RF2" indicates it is translated from the seconding reading frame (starting from second nucleotide) of its transcript with stop codon allowed in the middle.