Data · dataset · 2025
IQA data of cis-trans Proline isomerization in small peptides
Listed in Teesside University Research Data Repository
We carried out quantum mechanical (QM) calculations aimed to investigate the cis-trans equilibria of short peptides: Ace-Y-Nme, Ace-X-Y-Nme, and Leu-Y with X=Gln, Leu, Tyr and Y=Pro, Ala.
Description
Using the interacting quantum atom method, we decomposed the average QM energies into physical components. The tar files deposited in this dataset contain the IQA data in csv format, including Cartesian coordinates, atomic charges, energy descriptors, etc.
For each peptide model, we performed 100 QM calculations (200 for zwitterions) at the HF-D3/cc-pVTZ SMD level on structures obtained from MD simulations in explicit solvent that were previously relaxed using QM/MM calculations (HF-D3/cc-pVDZ // AMBER FF19SB; only solute molecules were allowed to move). The QM energies were then decomposed using the IQA method implemented in PROMOLDEN. IQA calculations with large numerical errors in the total reconstructed energy were discarded.
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Details of the IQA protocol can be found at doi.org/10.1002/cphc.201701021 and doi.org/10.1002/cphc.201800733.
Links
Where it is published
- DOI doi.org/10.17632/z5tf8jp3kg.1 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Chemistry · Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Theoretical quantum chemistry 77%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/z5tf8jp3kg.1 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].anzsrc:field:340704 | enrichment · researchdata tees ac uk | taxonomy-embedding@1.0.0 | title+keywords+description (77%) |
| concepts[field].local:field:chemistry | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:engineering | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |