Data · dataset · 2024
The raw RNA-sequencing data pertaining to the SK-HEP-1 cell line
Listed in ScienceDB
The RNA-seq analysis was designed to explore the molecular response of SK-Hep-1 liver cancer cells to MC treatment, specifically examining the role of RACK1.
Description
SK-Hep-1 liver cancer cells were categorized into distinct treatment groups as follows: 1.Control Group, Cells were untreated and served as the baseline for comparison. 2.MC-Treated Group, Cells were exposed to MC 3.RACK1 Overexpression Group, Cells were genetically modified to overexpress RACK1. 4.RACK1 Overexpression + MC Group, This group combined RACK1 overexpression with MC treatment.Total RNA was isolated using the Trizol Reagent(Invitrogen Life Technologies),after the total RNA was qualified and quantified. 500 ng of total RNA was used for the construction of sequencing libraries.
And RNA libraries for RNA-seq were prepared using HieffNGS® mRNA Isolation Master Kit (YeasenCat#12603). We employed the DNBSEQ-T7 as the instrumental model for our study.The raw dataset is stratified into four distinct groups, each comprising three subfolders representing triplicate replicates, totaling twelve subfolders. These are sequentially denoted as sk_hep_1_PCDH_MC_1, sk_hep_1_PCDH_MC_2, sk_hep_1_PCDH_MC_3, sk_hep_1_PCDH0_1, sk_hep_1_PCDH0_2, sk_hep_1_PCDH0_3, sk_hep_1_RACK1_MC_1, sk_hep_1_RACK1_MC_2, sk_hep_1_RACK1_MC_3, sk_hep_1_RACK10_1, sk_hep_1_RACK10_2, sk_hep_1_RACK10_3.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.11456 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Cancer 75% · RNA sequencing 65% · Sequencing 75%
Provenance · 1 source records, 13 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.11456 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/rights |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |