Data · dataset · 2024
DNAseq of S. coelicolor foraging sectors
Listed in Researchdata.se
S. coelicolor was inoculated on FAM and incubated for 20 days at 30°C, to allow for sectors to form. the sectors were isolated and grown in TSB media and 600 mg pellet was collected and sent to MicrobesNG for DNA preparation and Illumina sequencing.
Description
Trimmed (Trimmomatic) and quality checked reads (using MicrobesNG in-house scripts combined with Samtools BedTools, and bwa-mem) were returned for (i) inoculum "WTparental", (ii) first level sector "alpha"/"A0", (iii) second levels sectors "I"/"A1" and "IV"/"A4".
Links
Where it is published
- DOI doi.org/10.17044/scilifelab.25593405 ↗
DOI / persistent id · from researchdata se
Catalogue records · 1
- OAI-PMH record api.researchdata.se/oai-pmh?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3A… ↗
metadata API · from researchdata se
Topics
- From keywords
- Earth & Environmental Science · Life Sciences · Medicine & Health
- Inferred from text
- Evolutionary biology 70% · Sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Researchdata.se | oai:researchdata.se:doi-10-17044-scilifelab-25593405/0 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[field].anzsrc:group:3104 | enrichment · researchdata se | taxonomy-embedding@1.1.0 | title+keywords+description (70%) |
| concepts[field].local:field:earth-environmental | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · researchdata se | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · researchdata se | connector:researchdata_se@1.0.0 | /metadata/dc/description |
| license | source · researchdata se | connector:researchdata_se@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata se | connector:researchdata_se@1.0.0 | |
| title | source · researchdata se | connector:researchdata_se@1.0.0 | /metadata/dc/title |