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Table · dataset · 2026

Table 1_IMicAP: an intelligent microbial application platform for knowledge-driven microbiome research.xlsx

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Background<p>Microorganisms play a pivotal role in health and disease, yet microbial research is hindered by fragmented data, heterogeneous knowledge representation, and a lack of integrated analytical tools.

Description

Existing databases and knowledge graphs often focus narrowly on genomic information, leaving critical metabolomic and literature-based associations underdeveloped.</p>Results<p>We developed the Intelligent Microbial Application Platform (IMicAP), an AI-driven, open-access web platform that integrates 12 microbial databases and over 35 million articles.

IMicAP delivers 5 core modules: (1) Knowledge Query module for rapid data retrieval; (2) Knowledge Graph module for multi-hop reasoning and hypothesis generation; (3) Intelligent Question-Answering module for professional natural language dialogue in the field of microbiology; (4) Genome Browser module for genomic visualization; and (5) 16S rRNA Sequencing Analysis module for zero-code microbial bioinformatics analysis.

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Using curated microbe-disease and microbe-small molecule relations extracted with biomedical language models, IMicAP enables context-aware exploration of microbial relations.</p>Conclusion<p>IMicAP (available at: imicap.com:8443) is the first comprehensive, open-access, AI-powered microbial platform designed to bridge the gap between fragmented microbial data and actionable biological insights. It directly addresses 4 key limitations in existing resources: (1) Fragmented analysis without integrated workflows; (2) Narrow disease scope covering only one or two disease types; (3) Incomplete knowledge from restricted data sources; and (4) neglect of metabolomic information.

IMicAP serves as a versatile resource for advancing microbiome research and translational discoveries. Future development focus on expanding microbial coverage, enhancing reasoning scalability, and evolving toward a dual knowledge-and-data-driven architecture to further support mechanistic discovery in microbial systems biology.</p>

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Catalogue records · 1

Topics

Inferred from text
Disease 75% · Sequencing 75% · Tabular 65%
Provenance · 11 source records, 21 field assertions
SourceKeyLast seenRaw
ZivaHub · removed upstreamoai:figshare.com:article/3403864514 d agoJSON v1
Deakin Research Online · removed upstreamoai:figshare.com:article/3403864514 d agoJSON v1
DMU Figshare · removed upstreamoai:figshare.com:article/3403864514 d agoJSON v1
HKU DataHub · removed upstreamoai:figshare.com:article/3403864513 d agoJSON v1
Swinburne Figshare · removed upstreamoai:figshare.com:article/3403864513 d agoJSON v1
DaYta Ya Rona · removed upstreamoai:figshare.com:article/3403864513 d agoJSON v1
SUNScholarData · removed upstreamoai:figshare.com:article/3403864513 d agoJSON v1
figshareoai:figshare.com:article/3403864513 d agoJSON v1
Loughborough Research Repository · removed upstreamoai:figshare.com:article/3403864513 d agoJSON v1
GRANTS Data · removed upstreamoai:figshare.com:article/3403864512 d agoJSON v1
UP Research Data Repository · removed upstreamoai:figshare.com:article/3403864512 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · figshare comconnector:figshare_com@1.0.0
concepts[disease].local:disease:diseaseenrichment · figshare comkeyword-concept-rules@1.0.0title+description (75%)
concepts[field].anzsrc:group:3107mapping · figshare comvocabulary-mapper@1.0.0keywords['Microbiology']
concepts[field].anzsrc:group:4602mapping · figshare comvocabulary-mapper@1.0.0keywords['artificial intelligence']
concepts[field].local:field:astronomymapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:chemistrymapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:computer-science-aimapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:earth-environmentalmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:economics-financemapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:engineeringmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:humanitiesmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:life-sciencesmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:medicine-healthmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:ocean-atmosphericmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:social-sciencemapping · figshare comconnector:figshare_com@1.0.0
concepts[modality].local:modality:sequencingenrichment · figshare comkeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:tabularenrichment · figshare comkeyword-concept-rules@1.0.0title+description (65%)
descriptionsource · figshare comconnector:figshare_com@1.0.0/metadata/dc/description
licensesource · figshare comconnector:figshare_com@1.0.0/metadata/dc/rights
publication_datesource · figshare comconnector:figshare_com@1.0.0
titlesource · figshare comconnector:figshare_com@1.0.0/metadata/dc/title