Omics · study · 2026
Crosstalk between RTG and TOR pathways mediates adaptation to amino acid starvation during fermentative growth in Saccharomyces cerevisiae.
Listed in NCBI GEO
In the presence of glucose, Saccharomyces cerevisiae prefers glycolysis followed by fermentation to generate ATP.
Description
One of the adaptations to this fermentative lifestyle is the retrograde pathway (RTG), which induces the transcription of genes, including several Krebs cycle genes, that increase pools of alpha-ketoglutarate. We previously found that both petite and RTG mutants are highly sensitive to canavanine, a toxic analog of arginine, indicating that residual respiration and the RTG pathway are required to maintain the levels of arginine in the cell.
Yet, from an amino acid biosynthesis standpoint, it is unclear how the RTG pathway balances between respiration and fermentation. Here, we show that use of a non-fermentable carbon source restored RTG mutants’ ability to grow without arginine and improved their tolerance of canavanine. Relief of glucose repression via deletion of MIG1 restored RTG mutant growth under arginine limitation and improved canavanine tolerance in some but not all RTG mutants. rtg2Delta mutants exhibited more canavanine sensitivity than other RTG mutants and was not rescued by mig1Delta, suggesting that this gene has an another role in addition to being a chaperone of the Rtg1/3 complex.
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Target of Rapamycin (TOR) signaling as a pro-growth factor suppresses the RTG pathway, but it is unknown if both pathways complement each other. We found that TOR signaling contributes to canavanine tolerance in an RTG dependent manner. The broad implications of our results are found in the importance of fermentative lifestyle under amino acid starvation as part of industrial and malignant ecosystems.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE316nnn/GSE316459 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE316459 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1402954 ncbi.nlm.nih.gov/bioproject/PRJNA1402954 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Saccharomyces cerevisiae
- From keywords
- Life Sciences
- Inferred from text
- Industrial biotechnology 69%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE316459 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3106 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (69%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:4932 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |