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Data · dataset · 2015

Examination of the effects of heterogeneous organization of RyR clusters, myofibrils and mitochondria on Ca2+ release patterns in cardiomyocytes

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This dataset contains the electron microscopy and confocal microscopy data that were used in a study published in PLoS Computational Biology (see reference below).

Description

The dataset contains: cardiac_cell_cross_section.rec: The 3D reconstructed electron tomogram that was used to generate a 3D model of myofibrils and mitochondria. Files containing .mod extension: Model files generated using IMOD containing the manual segmentation of myofibrils, mitochondria and sarcolemma in the 3D electron tomogram.

Sham11_phalloidin_2_transv_dec.tif: Deconvolved confocal stack of myofibrils (stained by phalloidin) in the samples that were used for RyR cluster distribution analysis and simulation in this study. Sham11_RyR_2*_transv_dec.tif: Deconvolved confocal image stack of the RyR clusters in the samples that were used for RyR cluster distribution analysis and simulation in this study. Sham11_phalloidin_RyR_plectin_undeconvolved.tif: The raw, un-deconvolved confocal image stack that was used in this study.

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Contains RyR, phalloidin and plectin stained images.

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Stated by source
Biological sciences · Mathematics
Inferred from text
Image 75% · Microscopy 75% · Simulation 75%
Provenance · 1 source records, 13 field assertions
SourceKeyLast seenRaw
DataCite10.4225/49/55b622ebe2d4c14 d agoJSON v1
FieldAssertionExtractorEvidence
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concepts[method].local:method:simulationenrichment · DataCitekeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:imageenrichment · DataCitekeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:microscopyenrichment · DataCitekeyword-concept-rules@1.0.0title+description (75%)
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