← Search

Omics · study · 2026

A phosphatidic acid-based retrograde signaling pathway responsive to abiotic stress in Arabidopsis.

Listed in NCBI GEO

Plants depend on photosynthesis as their primary means to generate energy and building blocks, and adverse environmental conditions can stress the photosynthetic apparatus leading to the production of toxic byproducts.

Description

In the long term, stress experienced by the chloroplast must be communicated to the nucleus to adjust the expression of genes providing robust abiotic stress resilience in a process called retrograde signaling.

We propose a retrograde signaling mechanism that starts with the accumulation of phosphatidic acid at the outer chloroplast membrane. A mutant of Arabidopsis thaliana, lppγ lppɛ1, disrupted in two chloroplast envelope membrane-located phosphatidic acid phosphatases shows reduced growth and activation of abscisic acid-mediated abiotic stress response pathways, among other changes, as determined by RNA-Seq analysis. The mutant is more resistant to freezing and osmotic stress.

Read the rest (1 more)

To identify components of the proposed retrograde signaling pathway, we conducted a suppressor screen in the lppγ lppɛ1 mutant and identified a mutation that causes the loss of MED16, which is a component of Mediator, a transcriptional complex in the nucleus affecting the expression of genes involved in freezing tolerance, among others. Based on these findings we are proposing a lipid-based, retrograde signaling mechanism in response to abiotic stresses such as freezing.

Links

Where it is published

Documentation and papers

Topics

From keywords
Life Sciences
Inferred from text
Biochemistry and cell biology 70% · RNA sequencing 65%
Provenance · 1 source records, 9 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE31912814 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[field].anzsrc:group:3101enrichment · NCBI GEOtaxonomy-embedding@1.1.0title+keywords+description (70%)
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[modality].local:modality:rna-seqenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (65%)
concepts[organism].NCBITaxon:3702source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title