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Data · collection · 2019

X-ray diffraction data of CpsORN

Listed in NASA Earthdata CMR

Cells regulate their intracellular mRNA levels by using specific ribonucleases.

Description

Oligoribonuclease (ORN) is a 3 -5 exoribonuclease for small RNA molecules, important in RNA degradation and re-utilisation. However, there is no structural information on the ligand-binding form of ORNs.

In this study, the crystal structures of oligoribonuclease from Colwellia psychrerythraea strain 34H (CpsORN) were determined in four different forms: unliganded-structure, thymidine 5 -monophosphate p-nitrophenyl ester (pNP-TMP)-bound, two separated uridine-bound, and two linked uridine (U-U)-bound forms. The crystal structures show that CpsORN is a tight dimer, with two separated active sites and one divalent metal cation ion in each active site.

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These structures represent several snapshots of the enzymatic reaction process, which allowed us to predict a possible one-metal-dependent reaction mechanism for CpsORN. Moreover, the biochemical data support our suggested mechanism and identified the key residues responsible for enzymatic catalysis of CpsORN.

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Provenance · 1 source records, 12 field assertions
SourceKeyLast seenRaw
NASA Earthdata CMRC2244301179-AMD_KOPRI15 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NASA CMRconnector:nasa_cmr@1.0.0
concepts[instrument].gcmd_instrument:not-applicablesource · NASA CMRconnector:nasa_cmr@1.0.0
concepts[measured_variable].gcmd:earth-science/biosphere/ecological-dynamics/community-dynamicssource · NASA CMRconnector:nasa_cmr@1.0.0
concepts[platform].gcmd_platform:not-applicablesource · NASA CMRconnector:nasa_cmr@1.0.0
created_datesource · NASA CMRconnector:nasa_cmr@1.0.0
descriptionsource · NASA CMRconnector:nasa_cmr@1.0.0/umm/Abstract
publication_datesource · NASA CMRconnector:nasa_cmr@1.0.0
spatialsource · NASA CMRconnector:nasa_cmr@1.0.0/umm/SpatialExtent
temporalsource · NASA CMRconnector:nasa_cmr@1.0.0/umm/TemporalExtents
titlesource · NASA CMRconnector:nasa_cmr@1.0.0/umm/EntryTitle
updated_datesource · NASA CMRconnector:nasa_cmr@1.0.0
version_labelsource · NASA CMRconnector:nasa_cmr@1.0.0