Data · dataset · 2025
Biodiversity of autotrophic euglenids based on the group specific DNA metabarcoding approach
Listed in GBIF and University of Warsaw Research Data Repository — shown once because both records carry DOI 10.15468/3dfshz
This study reports a comprehensive analysis of photoautotrophic euglenids’ distribution and biodiversity in 16 small water bodies of various types (including fish ponds, field ponds, rural ponds and park ponds) located in three regions of Poland: Masovia, Masuria and Pomerania during a period of three years.
Description
By employing a euglenid specific barcode marker and a curated database of V2 18S rDNA sequences it was possible to identify 97.7 % of euglenid reads at species level.
A total of 152 species classified in 13 genera were identified. The number of euglenid species found in one pond varied from 40 to 102. The most common species were Euglena agilis and Euglenaria caudata, found in every analysed waterbody.
Read the rest (2 more)
The highest number of observed species belonged to Trachelomonas and Phacus. Certain species exhibited a tendency to coexist, suggesting the presence of distinct species assemblages. Among them, the most distinctive cluster was associated with water bodies located in the Masuria region, characterized also by the greatest species richness, including many very rare species: Euglenaformis chlorophoenicea, Lepocinclis autumnalis, L. marssonii, Trachelomonas eurystoma, T. manschurica, T. mucosa, T. zuberi, T. zuberi var. nepos.
[This dataset was processed using the GBIF Metabarcoding Data Toolkit.]
Links
Get the data
Where it is published
- GBIF dataset page gbif.org/dataset/bc14093c-d689-4c3c-8b0f-0cbd041e5dd8 ↗
landing page · from gbif
- Dataverse dataset page danebadawcze.uw.edu.pl/dataset.xhtml?persistentId=doi%3A10.15468%2F3dfshz ↗
landing page · from danebadawcze uw edu pl
- DOI doi.org/10.15468/3dfshz ↗
DOI / persistent id · from gbif
Documentation and papers
- Publisher page sciencedirect.com/science/article/pii/S1434461024000166 ↗
documentation · from gbif
Catalogue records · 2
- GBIF API api.gbif.org/v1/dataset/bc14093c-d689-4c3c-8b0f-0cbd041e5dd8 ↗
metadata API · from gbif
- Dataverse API danebadawcze.uw.edu.pl/api/datasets/:persistentId/?persistentId=doi%3A10.15468%2F3dfs… ↗
metadata API · from danebadawcze uw edu pl
Topics
- From keywords
- Life Sciences
- Inferred from text
- Evolutionary biology 74%
Provenance · 2 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| GBIF | bc14093c-d689-4c3c-8b0f-0cbd041e5dd8 | 11 d ago | JSON v1 |
| University of Warsaw Research Data Repository | doi:10.15468/3dfshz | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · gbif | connector:gbif@1.0.0 | |
| concepts[field].anzsrc:group:3104 | enrichment · gbif | taxonomy-embedding@1.1.0 | title+keywords+description (74%) |
| concepts[field].local:field:life-sciences | mapping · gbif | connector:gbif@1.0.0 | |
| created_date | source · gbif | connector:gbif@1.0.0 | |
| description | source · gbif | connector:gbif@1.0.0 | /description |
| license | source · gbif | connector:gbif@1.0.0 | |
| publication_date | source · gbif | connector:gbif@1.0.0 | |
| spatial | source · gbif | connector:gbif@1.0.0 | |
| temporal | source · gbif | connector:gbif@1.0.0 | |
| title | source · gbif | connector:gbif@1.0.0 | /title |
| updated_date | source · gbif | connector:gbif@1.0.0 |