Data · dataset · 2026
Raw dataset related to splicing factor integration
Listed in ScienceDB
Integration of this dataset ATtRACT、AURA、ENCODE、HGNC、RBPDB、SFMetaDB、SpliceAid-F、SpliceosomeDB、SplicingLore Completed data cleaning, identifier standardization, redundancy removal, and literature verification for 10 public databases related to splicing regulation with TAIR.
Description
The dataset contains 1684 non redundant splicing factors, 771232 splicing factor target gene interaction records, 7880 PWM motif data, covering 27 species; Simultaneously included in the TCGA SplAdder dataset, which includes statistical results of 32 human cancer alternative splicing events.
The file contains standardized interaction tables, PWM motif matrices, species annotation files, and cancer alternative splicing summary tables; The rows of the data table represent splicing factor/target gene entries, while the columns contain fields such as gene ID, species, confidence score, regulatory relationship, etc. The dataset has been validated through literature sampling and shows no systematic data loss. It can be used for data reuse, predictive analysis, and cross validation in studies related to alternative splicing regulation, RNA binding proteins, and tumor splicing abnormalities.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.43201 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.43201 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:tabular | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/rights |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |