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Data · dataset · 2026

Raw dataset related to splicing factor integration

Listed in ScienceDB

Integration of this dataset ATtRACT、AURA、ENCODE、HGNC、RBPDB、SFMetaDB、SpliceAid-F、SpliceosomeDB、SplicingLore Completed data cleaning, identifier standardization, redundancy removal, and literature verification for 10 public databases related to splicing regulation with TAIR.

Description

The dataset contains 1684 non redundant splicing factors, 771232 splicing factor target gene interaction records, 7880 PWM motif data, covering 27 species; Simultaneously included in the TCGA SplAdder dataset, which includes statistical results of 32 human cancer alternative splicing events.

The file contains standardized interaction tables, PWM motif matrices, species annotation files, and cancer alternative splicing summary tables; The rows of the data table represent splicing factor/target gene entries, while the columns contain fields such as gene ID, species, confidence score, regulatory relationship, etc. The dataset has been validated through literature sampling and shows no systematic data loss. It can be used for data reuse, predictive analysis, and cross validation in studies related to alternative splicing regulation, RNA binding proteins, and tumor splicing abnormalities. 

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Where it is published

Catalogue records · 1

Topics

Inferred from text
Cancer 75% · Tabular 65%
Provenance · 1 source records, 12 field assertions
SourceKeyLast seenRaw
ScienceDB10.57760/sciencedb.4320110 d agoJSON v1
FieldAssertionExtractorEvidence
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