Data · dataset · 2025
HPRC samples R10.4.1 bam files (2)
Listed in ScienceDB
Description
Raw basecalled BAM files were downloaded from human pangenome reference consortium s3-us-west-2.amazonaws.com/human-pangenomics/index.html?prefix=working/.BAM files were re-aligned to the GRCh38 reference genome (GenBank assembly ID GCA_000001405.15) using Dorado v0.7.2 with command "dorado aligner -t 80 --mm2-preset "-x map-ont" ${reference.fa} ${input.bam} --output-dir ${outdir}/${output}", followed by catting, sorting , and indexing with Samtools.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.31291 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.31291 | 9 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license_text | source · scidb cn | connector:scidb_cn@1.0.0 | |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |