Data · dataset · 2022
SHREC Cryo-ET 2020 Dataset: Classification in Cryo-Electron Tomograms
Listed in IISH Dataverse
There is a noticeable gap in knowledge about the organization of cellular life at the mesoscopic level.
Description
With the advent of the direct electron detectors and the associated resolution revolution, cryo-electron tomography (cryo-ET) has the potential to bridge this gap by simultaneously visualizing the cellular architecture and structural details of macromolecular assemblies, thee-dimensionally. The technique offers insights in key cellular processes and opens new possibilities for rational drug design.
However, the biological samples are radiation sensitive, which limits the maximal resolution and signal-to-noise ratio. Innovation in computational methods remains key to derive biological information from the tomograms. To promote such innovation, we organize this SHREC track and provide a simulated dataset with the goal of establishing a benchmark in localization and classification of biological particles in cryo-electron tomograms.
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The publicly available dataset contains ten reconstructed tomograms obtained from a simulated cell-like volume. Each volume contains twelve different types of proteins, varying in size and structure. Participants had access to 9 out of 10 of the cell-like ground-truth volumes for learning-based methods, and had to predict protein class and location in the test tomogram.
You can find more details in the related publication and on the contest webpage.
Links
Where it is published
- Dataverse dataset page dataverse.nl/dataset.xhtml?persistentId=doi%3A10.34894%2FY2ZMRH ↗
landing page · from datasets iisg amsterdam
- DOI doi.org/10.34894/y2zmrh ↗
DOI / persistent id · from datasets iisg amsterdam
Catalogue records · 1
- Dataverse API dataverse.nl/api/datasets/:persistentId/?persistentId=doi%3A10.34894%2FY2ZM… ↗
metadata API · from datasets iisg amsterdam
Topics
- Stated by source
- Medicine, Health and Life Sciences
- From keywords
- Life Sciences · Medicine & Health
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| IISH Dataverse | doi:10.34894/Y2ZMRH | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].dataverse_subject:medicine-health-and-life-sciences | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
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| description | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /description |
| publication_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| title | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /name |
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