Omics · study · 2026
ADAM interact with large protein complexes to regulate Histone modification, gene expression and splicing
Listed in NCBI GEO
Cranial neural crest (CNC) cells are key stem cells that contribute to most of the facial structures in all vertebrates.
Description
Previous work has shown that multiple ADAM (A Disintegrin And Metalloprotease) cell surface metalloproteases are essential for the induction and migration of the CNC in multiple vertebrate animal models. In Xenopus, we have shown that Adam13 associates with the transcription factor Arid3a to regulate gene expression.
Here we show that Adam13 regulates gene expression by modulating Histone modifications globally in the CNC. Furthermore, we show that Arid3a binding to the tfap2α promoter depends on the presence of Adam13. This association promotes the expression of one tfap2α variant predominantly expressed in the CNC that uniquely activates the expression of calpain-8, a gene critical for CNC migration.
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This tfap2α variant selectively associates with proteins involved with mRNA splicing, a function that is critically affected by the loss of Adam13 in the CNC. Our results suggest that ADAM metalloproteases may act as sensors of the environment that can modulate chromatin availability, leading to changes in gene expression and splicing.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE276nnn/GSE276672 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE276672 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1158669 ncbi.nlm.nih.gov/bioproject/PRJNA1158669 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Zoology 69%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE276672 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3109 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (69%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |