Omics · study · 2026
Early Transcriptomic Response of Leptospira interrogans in an Ovine Dialysis Membrane Chamber Model
Listed in NCBI GEO
Leptospirosis is a major zoonotic disease affecting both public health and livestock production.
Description
In ruminants, serovar Hardjo is of particular importance because of its ability to establish persistent infections, whereas serogroup Icterohaemorrhagiae is generally associated with incidental infection. The molecular basis of adaptation of serovar Hardjo to the ruminant host remain poorly understood. .
The dialysis membrane chamber (DMC) model enables investigation of the short-term transcriptional response of leptospires to the host environment, including nutrient limitation, temperature and osmotic shifts, and soluble host-derived factors. In this study, an ovine peritoneal DMC model was used to compare the transcriptional responses of L. interrogans serovar Hardjo strains KR40 and N116 with those of L. interrogans serogroup Icterohaemorrhagiae strains KR93 and KR95.
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For each strain, transcriptomic data were obtained after 24 h and 72 h of incubation in DMCs, as well as from in vitro cultures grown in T80/40/LH medium. This experimental design enabled the identification of shared and strain-associated transcriptional responses to the host environment.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE342nnn/GSE342756 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342756 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1508857 ncbi.nlm.nih.gov/bioproject/PRJNA1508857 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Animal production 69% · Disease 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE342756 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:group:3003 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (69%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |