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Excel · study · 2026

Effect of artificial control system (hQSCS) on native transcriptome of S. erythraea during erythromycin fermentation

Listed in NCBI GEO

Reconstructing an artificial control system orthogonal to the native regulatory network of Saccharopolyspora erythraea is critical for circumventing the constraints imposed by its complex endogenous regulation.

Description

Here, we present a transcriptional profiling dataset of S. erythraea strain harboring the heterologous QS control system (hQSCS) during erythromycin fermentation. This dataset was generated to characterize the transcriptional response of host cells upon activation of the heterologous hQSCS.

Specifically, RNA sequencing was performed on strain without hQSCS (control) and hQSCS engineered strain (treatment), both cultured in TSB medium for 72 h. Differential expression analysis of this dataset will help determine whether hQSCS exerts regulatory crosstalk with the native transcriptome of S. erythraea, which is essential for verifying the orthogonality of hQSCS. Collectively, this transcriptional dataset provides a valuable resource for investigating the orthogonality of hQSCS in S. erythraea and offers insights into the development of orthogonal control systems for other rare actinomycetes.

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From keywords
Life Sciences
Inferred from text
Biochemistry and cell biology 73% · RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE31616013 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[field].anzsrc:group:3101enrichment · NCBI GEOtaxonomy-embedding@1.1.0title+keywords+description (73%)
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[modality].local:modality:rna-seqenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:sequencingenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title