Data · dataset
[Ampithoe valida population genetics] - Population genomics (RADseq-derived SNP genotypes) of the amphipod Ampithoe valida from collections in Japan, North America, and South America in 2015 (Detecting genetic adaptation during marine invasions)
Listed in Biological and Chemical Oceanography Data Management Office (BCO-DMO) ERDDAP
We clarified the cryptic diversity and introduction history of the marine amphipod Ampithoe valida by genotyping 10,295 single-nucleotide polymorphisms (SNPs) for 349 individuals from Japan, North America and Argentina.
Description
This dataset includes metadata, methods, genetic accession identifiers, and links to published code and processed data used to generate figures for the results publication Harper et al. (2022, doi:10.1007/s10592-022-01452-8) titled "Global distribution of cryptic native, introduced and hybrid lineages in the widespread estuarine amphipod Ampithoe valida." Raw FASTQ files were contributed to the National Center for Biotechnology Information (NCBI)'s Sequence Read Archive (SRA) and are available under BioProject PRJNA825556.
Links
Where it is published
- ERDDAP dataset info erddap.bco-dmo.org/erddap/info/bcodmo_dataset_998972_v1/index.html ↗
landing page · from erddap bco dmo org
Documentation and papers
- Dataset documentation osprey.bco-dmo.org/dataset/998972 ↗
documentation · from erddap bco dmo org
Catalogue records · 1
- ERDDAP tabledap access form erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_998972_v1.html ↗
metadata API · from erddap bco dmo org
Topics
- From keywords
- Ocean & Atmospheric Science
Provenance · 1 source records, 5 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Biological and Chemical Oceanography Data Management Office (BCO-DMO) ERDDAP | bcodmo_dataset_998972_v1 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | |
| description | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | /summary |
| spatial | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | |
| title | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | /title |