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Data · dataset · 2026

SPFvsGF_5R16S rRNA

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Description

Specified Pathogen Free (SPF, n=16) and germ free (GF, n=16) mice (C57BL/6) were purchased from Kunshan Mingqian Microbiology Research Institute(Kunshan, China)。 To prevent contamination of GF mice during transportation and maintain consistent sampling environments for both groups of samples, ovarian sampling was performed in a sterile manner in the laboratory's ultra clean workbench of the purchasing company. After ovarian collection, it was sealed and transported in dry ice to Hangzhou Lianchuan Biotechnology Co., Ltd.

(Hangzhou, China) for 5R 16S rRNA gene sequencing. The DNA of ovarian tissue was extracted using a bacterial genome extraction kit (TIANGEN, DP302-02). Design primers targeting the variable regions of 16S rDNA V2, V3, V5, V6, and V8 (5R primers; Supplementary Table 1) (5R primers: V2 forward TGGGAACGGGTGTAAA, V2 reverse CCGTGTCTCAGTCCCARTG; V3 forward - ACTCCTACGGGAGGCAGC, V3 reverse - GTATTACCGCGGCTGCTG; V5 forward - GTGTAGGGTGRAATGCG, V5 reverse - CCCGTCAATTCMTTGAGTT; V6 forward - GGAGCATGTGGWTTAATTCGA, V6 reverse - CGTTGCGGGACTTAACCC; V8 Forward - GGAGGAAGGTGGGGATGAC, V8 Reverse - AAGGCCCGGGAACGTATT; )Perform PCR amplification, purify and quantify the PCR products using AMPure XP beads (Beckman Coulter Genomics, Danvers, MA, USA), and perform high-throughput sequencing (NovaSeq 6000 SP Reagent Kit; Illumina NovaSeq 6000).

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The Short Multi Regions Framework (SMURF) was used to integrate sequencing data from five variable regions, and the 16S rRNA fragments were reconstructed using the maximum expected algorithm. Species taxonomy annotation was performed based on the Greengenes2 (2024) database. 

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Catalogue records · 1

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Inferred from text
Sequencing 75% · Tabular 65%
Provenance · 1 source records, 12 field assertions
SourceKeyLast seenRaw
ScienceDB10.57760/sciencedb.013vu9 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:earth-environmentalmapping · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:engineeringmapping · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:humanitiesmapping · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:life-sciencesmapping · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:social-sciencemapping · scidb cnconnector:scidb_cn@1.0.0
concepts[modality].local:modality:sequencingenrichment · scidb cnkeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:tabularenrichment · scidb cnkeyword-concept-rules@1.0.0title+description (65%)
descriptionsource · scidb cnconnector:scidb_cn@1.0.0/metadata/dc/description
licensesource · scidb cnconnector:scidb_cn@1.0.0/metadata/dc/rights
publication_datesource · scidb cnconnector:scidb_cn@1.0.0
titlesource · scidb cnconnector:scidb_cn@1.0.0/metadata/dc/title