Omics · study · 2026
Uncoupling the TFIIH Core and Kinase Modules Leads to High CTD Serine 5 Phosphorylation Throughout Transcription
Listed in NCBI GEO
TFIIH is a transcription initiation factor for RNA polymerase II (RNApII).
Description
This multi-subunit complex comprises two modules that are physically linked by the Tfb3 (MAT1 in metazoans). The Core Module carries two DNA-dependent ATPases that unwind DNA, not only for transcription but also nucleotide excision repair.
The Kinase Module phosphorylates the C-terminal domain (CTD) of RNApII subunit Rpb1 to facilitate the transition of initiation complexes to elongation. Yeast Tfb3 can be split into two parts to uncouple the TFIIH modules, and resulting cells are viable but slow-growing. Chromatin immunoprecipitation shows that Core, but not Kinase, is properly recruited to promoters.
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Surprisingly, instead of the normal promoter-proximal peak, CTD phosphorylation is now spread throughout transcribed regions.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE241nnn/GSE241436 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE241436 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1008158 ncbi.nlm.nih.gov/bioproject/PRJNA1008158 ↗
project · from NCBI GEO
- PubMed 42258375 pubmed.ncbi.nlm.nih.gov/42258375 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Saccharomyces cerevisiae
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE241436 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:4932 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |