Data · dataset · 2026
Record-level audit of the public INSDC wastewater SARS-CoV-2 sequencing archive (NCBI BioSample), ascertained 15 September 2026
Listed in Teesside University Research Data Repository
This dataset (Supplementary Data 1) provides a complete census of all 82,757 SARS-CoV-2 wastewater sequencing records from the NCBI BioSample archive, ascertained on 15 September 2026 via NCBI E-utilities.
Description
The dataset includes record-level metadata: accession, submitting institution (Owner), submission date, geographic location (geo_loc_name), collection date, organism, isolation source, and parent BioProject. Derived variables are also provided, including harmonized ISO 3166-1 sampling country, submitting institution country attribution, submission pathway (hub-routed vs. independent domestic), and collection-to-submission lag.
Additionally, the dataset links to WHO COVID-19 cumulative mortality data. A comprehensive data dictionary is included to describe every field. This dataset supports the audit of submission pathway concentration, velocity, and burden-presence decoupling in global wastewater surveillance.
Links
Where it is published
- DOI doi.org/10.17632/4dfbz73zhz.1 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Earth & Environmental Science · Epidemiology · Medicine & Health · Public health
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/4dfbz73zhz.1 | 17 h ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].anzsrc:group:4202 | mapping · researchdata tees ac uk | vocabulary-mapper@1.0.0 | keywords['Epidemiology'] |
| concepts[field].anzsrc:group:4206 | mapping · researchdata tees ac uk | vocabulary-mapper@1.0.0 | keywords['Public Health'] |
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |