Data · dataset · 2023
RandomShimDB: A subset of the NMR magnet shimming database ShimDB
Listed in RADAR and RADAR4Memory — shown once because both records carry DOI 10.35097/1433
Description
# RandomShimDB: A subset of the NMR magnet shimming database ShimDB RandomShimDB is a subset of the NMR magnet shimming database ShimDB and contains over 15000 instances. Data is aquired on a Spinsolve 80 Carbon spectrometer (Magritek GmbH, Aachen, Germany, www.magritek.com) on 5%vv H2O in D2O and a water solution with CuSO4 (5mmol/L). RandomShimDB is part of "Acquisitions with random shim values enhances AI-driven NMR shimming" by M. Becker et al. [1].
The acquisition procedure was as follows. The manufacturer's automated shimming technique, based on the downhill simplex method, was used to obtain a reference spectrum. Then, the shims X, Y, Z and Z2 were varied.
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The dataset parameters were obtained by relative offsets from the reference shim values in a range R with weighting W, following Gaussian noise sampling. For each combination, the raw FID, acquisition parameters, and the shim values were stored. | Topic | Parameter | Value | |------------------------|------------------|-----------------------| | Dataset parameters | Shims | X,Y,Z,Z2 | | | Weightings W | [1.2, 1.0, 2.0, 18.0] | | | Shim range R | +/- 50 | | | Sample I | H2O+CuSO4 | | | Sample II | 5vol% H2O in D2O | | | Nr. spectra | {5000,10000} | | Acquisition parameters | Nucleus | 1H | | | Bandwidth | 5 kHz | | | Points | 32768 | | | Repetition time | 2000 ms | | | Phase correction | phi_0 | **We strongly encourage researchers to extend ShimDB with their own subsets to stimulate developments.
We offer to include raw data or links to your publications into ShimDB.** ## Files format Each folder in RandomShimDB contains the following files: - data.1d -> the raw FID. - shims.par -> Shim values, where only linear shims are non-zero. - acqu.par -> Acquisition parameters. - proc.par -> Processing parameters. The RandomShimDB root folder also contains the reference starting shims (ReferenceShims.par). ## Data loading We deliver a python script ```utils_IO.py``` alongside ShimDB to easily load the database into numpy array structure using the nmrglue packages[2].
The following python libraries and packages are required: os, numpy, glob, nmrglue (>= v0.9.dev0) # References [1] M. Becker, S. Lehmkuhl, S. Kesselheim, J. G. Korvink, and M. Jouda, “Acquisitions with random shim values enhance AI-driven NMR shimming,” J. Magn. Reson., p. 107323, 2022, doi: doi.org/10.1016/j.jmr.2022.107323. [2] J. J. Helmus and C. P. Jaroniec, “Nmrglue: An open source Python package for the analysis of multidimensional NMR data,” J. Biomol.
NMR, vol. 55, no. 4, pp. 355–367, 2013, doi: doi.org/10.1007/s10858-013-9718-x.
Links
Where it is published
- DOI doi.org/10.35097/1433 ↗
DOI / persistent id · from radar service eu de
Catalogue records · 1
- OAI-PMH record radar-service.eu/oai/OAIHandler?verb=GetRecord&metadataPrefix=oai_dc&identifier… ↗
metadata API · from radar service eu de
Topics
- From keywords
- Earth & Environmental Science · Earth & Environmental Science · Engineering · Engineering
Provenance · 2 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| RADAR | 10.35097/1433 | 13 d ago | JSON v1 |
| RADAR4Memory | 10.35097/1433 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · radar service eu de | connector:radar_service_eu_de@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · radar4memory radar service eu | connector:radar4memory_radar_service_eu@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · radar service eu de | connector:radar_service_eu_de@1.0.0 | |
| concepts[field].local:field:engineering | mapping · radar4memory radar service eu | connector:radar4memory_radar_service_eu@1.0.0 | |
| concepts[field].local:field:engineering | mapping · radar service eu de | connector:radar_service_eu_de@1.0.0 | |
| description | source · radar service eu de | connector:radar_service_eu_de@1.0.0 | /metadata/dc/description |
| license | source · radar service eu de | connector:radar_service_eu_de@1.0.0 | /metadata/dc/rights |
| publication_date | source · radar service eu de | connector:radar_service_eu_de@1.0.0 | |
| title | source · radar service eu de | connector:radar_service_eu_de@1.0.0 | /metadata/dc/title |