Data · dataset · 2021
Dataset of SARS-CoV-2 wastewater data from Knivsta, Sweden
Listed in SciLifeLab Data Repository
Description
This is a metadata record for a continuously updated dataset of SARS-CoV-2 RNA data in wastewater in Knivsta.<div><br>The dataset is part of a research study led associate professor Anna J. Székely (SLU, Swedish University of Agricultural Sciences) and her research groups in collaboration with Uppsala Vatten. The research group is part of the Environmental Virus Profiling Research Area of the SciLifeLab National COVID-19 Research Program.<div><br></div><div>The viral content is concentrated according to the protocol from Ahmed et al. <a href="doi.org/10.1016/j.scitotenv.2020.139960" target="_blank">doi.org/10.1016/j.scitotenv.2020.139960</a></div><div>according to the modified electronegative filtration method.
Viral RNA is extracted and SARS-CoV-2 gene copy nr quantified using R-qPCR. Recovery efficiency is measured using Bovine coronavirus (BCoV) as a virus surrogate. Pepper mild mottle virus (PPMoV) is used to correct for variations in water size and flow.
Read the rest (2 more)
For more information see<br><a href="covid19dataportal.se/data_types/environment/wastewater/#uppsala">https://www.covid19dataportal.se/data_types/environment/wastewater/#uppsala</a><br></div><div>The dataset started week 12 2021 and updates weekly.</div><div><br>The dataset is available as part of the Environmental Virus Profiling data section " The amount of SARS-CoV-2 virus in wastewater across Sweden" <a href="covid19dataportal.se/data_types/environment/wastewater/#uppsala">https://www.covid19dataportal.se/data_types/environment/wastewater/#uppsala</a> on the Swedish COVID-19 Data Portal (<a href="covid19dataportal.se/">https://covid19dataportal.se</a>).
The dataset is also available as part of the CRUSH Covid project <a href="crush-covid.shinyapps.io/crush_covid/">https://crush-covid.shinyapps.io/crush_covid/</a></div></div>
Links
Where it is published
- DOI doi.org/10.17044/scilifelab.14661213.v1 ↗
DOI / persistent id · from figshare scilifelab se
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from figshare scilifelab se
Topics
- From keywords
- Earth & Environmental Science · Infectious diseases · Life Sciences · Medicine & Health
Related
- Possibly the same asDataset of SARS-CoV-2 wastewater data from Knivsta, Sweden
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| SciLifeLab Data Repository | oai:figshare.com:article/14661213 | 3 h ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · figshare scilifelab se | connector:figshare_scilifelab_se@1.0.0 | |
| concepts[field].anzsrc:field:320211 | mapping · figshare scilifelab se | vocabulary-mapper@1.0.0 | keywords['Infectious diseases'] |
| concepts[field].local:field:earth-environmental | mapping · figshare scilifelab se | connector:figshare_scilifelab_se@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare scilifelab se | connector:figshare_scilifelab_se@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare scilifelab se | connector:figshare_scilifelab_se@1.0.0 | |
| description | source · figshare scilifelab se | connector:figshare_scilifelab_se@1.0.0 | /metadata/dc/description |
| license | source · figshare scilifelab se | connector:figshare_scilifelab_se@1.0.0 | /metadata/dc/rights |
| publication_date | source · figshare scilifelab se | connector:figshare_scilifelab_se@1.0.0 | |
| title | source · figshare scilifelab se | connector:figshare_scilifelab_se@1.0.0 | /metadata/dc/title |