Data · dataset · 2022
Raw expression data for genes related to DNA repair and metabolism
Listed in DataCite
Data: raw expression data (read counts) for 519 genes related to DNA repair and metabolism.
Description
Method
Next Generation Sequencing using Ion Torrent S5XL platform. Samples: peripheral blood mononuclear cells isolated from whole blood samples collected from 8 patients with lower extremity artery disease (LEAD), 7 patients with abdominal aortic aneurysm (AAA), 7 patients with chronic venous disease (CVD) and 7 healthy volunteers (Controls). This dataset was used for publication: Next Generation Sequencing in the Assasment of the Transcriptomic Landscape of DNA Damage Repair Genes in Abdominal Aortic Aneurysm, Chronic Venous Disease and Lower Extremity Artery Disease by Karol P. Ruszel, Daniel P. Zalewski, Andrzej Stępniewski, Dariusz Gałkowski, Jacek Bogucki, Marcin Feldo, Janusz Kocki and Anna Bogucka-Kocka.
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If you use this dataset, please cite our paper. Detailed bibliographic data will be provided after publication of our paper.
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/Raw_expression_data_for_genes_related_to_DNA_… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.19518010.v1 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.19518010.v1 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.19518010.v1 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Basic medicine · Biological sciences
- Inferred from text
- Disease 75% · Gene expression 80% · Sequencing 75%
Related
Provenance · 1 source records, 13 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.19518010.v1 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:field:310505 | enrichment · DataCite | taxonomy-embedding@1.1.0 | title+keywords+description (80%) |
| concepts[field].fos:basic-medicine | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |